PlantSME Plant secondary metabolism enzyme database

Avena atlantica (avena_atlantica)

Imported from atlas release summary for Avena atlantica.

2509
Candidate Genes
105
Families
6
Pathways
Phylogenetic Position
The current species is positioned within the lineage framework used by this site. Its taxon group is highlighted below.
Algae
Site group 29
Bryophytes
Site group 125
Lycophytes/Ferns
Site group 4
Gymnosperms
Site group 6
Basal angiosperms
Site group 13
Monocots
Current group 117
Eudicots
Site group 495
Species Metadata
Taxon group
Monocots
Genome status
Genome-level resource available
Site Placement
  • This page summarizes pathway coverage, family distributions, and the gene list for the species within the current public dataset.
  • If you want to start from the public overview first, open the homepage and then return here for species-level drill-down.
  • Family statistics correspond to enzyme families, while pathway statistics correspond to the real category-level pathways.
Pathway Coverage
Terpenoid pathway 29.06% Alkaloid pathway 23.48% Phenylpropanoid pathway 19.45% Flavonoid pathway 14.83% Rosmarinic acid pathway 8.65% Steroid pathway 4.54%
Family Distribution
C4H 6.98% C3'H/CYP98A 6.84% BAHD 5.48% POD 4.18% UGT 4.11% CYP76 4.07% 7DLGT 3.92% UFGT 3.86%
Other Families 60.56%
More Families (97)
T3O 239 3.77% IFS 213 3.36% BR6OX2/CYP85A2 178 2.8% F3'H/CYP75B 171 2.69% 4CL 162 2.55% DWF4/CYP90B1 134 2.11% F3H 120 1.89% PYKS 118 1.86% CYP71 104 1.64% NMT 92 1.45% STR 89 1.4% SMT1/SMT2/SMT3 86 1.36% TPS 84 1.32% CAD 83 1.31% PMT 80 1.26% GES 73 1.15% CODM/T6ODM 67 1.06% COMT 67 1.06% CAS 66 1.04% H6H 64 1.01% RAS 61 0.96% PAL 60 0.95% TRI/TRII 59 0.93% SGD 59 0.93% HCT 58 0.91% G8O/G8H 57 0.9% FNS 54 0.85% CSE 53 0.84% 16OMT 52 0.82% T16H 51 0.8% SLS 51 0.8% CYP51G1 48 0.76% ANR 45 0.71% CHS 43 0.68% LAC 40 0.63% GS 38 0.6% CYP90D1 36 0.57% F3'5'H/CYP75A 35 0.55% IFR 35 0.55% CCR 35 0.55% IO 34 0.54% NCS 32 0.5% BBE 32 0.5% BR6OX1/CYP85A1 29 0.46% LAMT 28 0.44% F5H/CYP84A 27 0.43% CNMT 26 0.41% AACT 20 0.32% 8HGO 19 0.3% CYP719 18 0.28% TYDC_DDC 17 0.27% CPD/CYP90A1 17 0.27% FPPS 17 0.27% ANS/LDOX 15 0.24% CYP80B1 14 0.22% 7DLH 13 0.2% TAT 13 0.2% CYP80F1 12 0.19% COR 12 0.19% DFR 11 0.17% CPR 11 0.17% SMO1/SMO2 11 0.17% CCoAOMT 10 0.16% HPPR 10 0.16% MVK 9 0.14% XMT_MXMT_DXMT 8 0.13% GGPPS 8 0.13% ADC 7 0.11% FLS 7 0.11% ROT3/CYP90C1 7 0.11% MPO 6 0.09% 6OMT_4OMT_SOMT 6 0.09% HMGR 6 0.09% DWF1 5 0.08% SQS/FDFT1 5 0.08% IDI 5 0.08% HMGS 5 0.08% TDC 4 0.06% ISY 4 0.06% DET2 4 0.06% MCT/IspD 4 0.06% MVD 4 0.06% ODC 3 0.05% SQE 3 0.05% HYD1 3 0.05% DXS 3 0.05% MDS/IspF 3 0.05% HDS/IspG 3 0.05% CHI 2 0.03% DWF7 2 0.03% DXR 2 0.03% CMK/IspE 2 0.03% FK 1 0.02% DWF5 1 0.02% CPI1 1 0.02% PMK 1 0.02% HDR/IspH 1 0.02%
Species Pathway Results
The links below show identification results for this species within each pathway, instead of opening the global pathway overview.
Pathway Candidate Genes Families Top family Results
Terpenoid pathway 729 20 BAHD (263) View species results
Alkaloid pathway 589 23 7DLGT (118) View species results
Phenylpropanoid pathway 488 11 POD (247) View species results
Flavonoid pathway 372 12 UFGT (238) View species results
Rosmarinic acid pathway 217 7 C4H (114) View species results
Steroid pathway 114 12 SMT1/SMT2/SMT3 (53) View species results
Broad Catalytic Groups
P450/oxygenase and BAHD/acyltransferase are counted separately as broad catalytic groups and are not mixed into the canonical enzyme-family count.
Catalytic group Families Candidate genes Included families
P450/oxygenase 24 2623 7DLH, BR6OX1/CYP85A1, BR6OX2/CYP85A2, C3'H/CYP98A, C4H, CPD/CYP90A1, CYP51G1, CYP71, CYP719, CYP76, CYP80B1, CYP80F1, CYP90D1, DWF4/CYP90B1, F3'5'H/CYP75A, F3'H/CYP75B, F5H/CYP84A, G8O/G8H, IFS, IO, ROT3/CYP90C1, SLS, T16H, T3O
BAHD/acyltransferase 3 467 BAHD, HCT, RAS
Identification Result List
Search the public identification results for this species; click pathway or family legends above to narrow within this species.
Current family filter: PAL
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Gene Pathway Family Confidence Status Best Target
AatlScoFOjO_1760_23990163350.1 Rosmarinic Acid PAL high pass PAL__00001__sp_P24481_PAL1_PETCR
AatlScoFOjO_1760_23990174730.1 Rosmarinic Acid PAL high pass PAL__00008__sp_Q8VXG7_PALY_MAIZE
AatlScoFOjO_1760_23990178490.1 Rosmarinic Acid PAL high pass PAL__00001__sp_P24481_PAL1_PETCR
AatlScoFOjO_1760_23990181690.1 Rosmarinic Acid PAL high pass PAL__00008__sp_Q8VXG7_PALY_MAIZE
AatlScoFOjO_1760_23990181730.1 Rosmarinic Acid PAL high pass PAL__00001__sp_P24481_PAL1_PETCR
AatlScoFOjO_1760_23990181740.1 Rosmarinic Acid PAL high pass PAL__00001__sp_P24481_PAL1_PETCR
AatlScoFOjO_2050_27120251030.1 Rosmarinic Acid PAL high pass PAL__00008__sp_Q8VXG7_PALY_MAIZE
AatlScoFOjO_2069_27320299860.1 Rosmarinic Acid PAL high pass PAL__00001__sp_P24481_PAL1_PETCR
AatlScoFOjO_2069_27320299890.1 Rosmarinic Acid PAL high pass PAL__00001__sp_P24481_PAL1_PETCR
AatlScoFOjO_411_5600480180.1 Rosmarinic Acid PAL medium pass PAL__00004__sp_P45725_PAL3_ARATH