Avena atlantica (avena_atlantica)
Imported from atlas release summary for Avena atlantica.
2814
Candidate Protein Records
2509
Pathway-Level Records
6346
Family-Level Calls
Phylogenetic Position
The current species is positioned within the lineage framework used by this site. Its taxon group is highlighted below.
Species Metadata
Taxon group
Monocots
Genome status
Genome-level resource available
Site Placement
- This page summarizes pathway coverage, family distributions, and protein/isoform records for the species within the current public dataset.
- If you want to start from the public overview first, open the homepage and then return here for species-level drill-down.
- Family statistics correspond to enzyme families, while pathway statistics correspond to the real category-level pathways.
- Download candidate protein FASTA for this species
Pathway Coverage
6
Pathways
Family Distribution
6346
Family-Level Calls
C4H
6.98%
C3'H/CYP98A
6.84%
BAHD
5.48%
POD
4.18%
UGT
4.11%
CYP76
4.07%
7DLGT
3.92%
UFGT
3.86%
Other Families
60.56%
More Families (97)
T3O
239
3.77%
IFS
213
3.36%
BR6OX2/CYP85A2
178
2.8%
F3'H/CYP75B
171
2.69%
4CL
162
2.55%
DWF4/CYP90B1
134
2.11%
F3H
120
1.89%
PYKS
118
1.86%
CYP71
104
1.64%
NMT
92
1.45%
STR
89
1.4%
SMT1/SMT2/SMT3
86
1.36%
TPS
84
1.32%
CAD
83
1.31%
PMT
80
1.26%
GES
73
1.15%
CODM/T6ODM
67
1.06%
COMT
67
1.06%
CAS
66
1.04%
H6H
64
1.01%
RAS
61
0.96%
PAL
60
0.95%
TRI/TRII
59
0.93%
SGD
59
0.93%
HCT
58
0.91%
G8O/G8H
57
0.9%
FNS
54
0.85%
CSE
53
0.84%
16OMT
52
0.82%
T16H
51
0.8%
SLS
51
0.8%
CYP51G1
48
0.76%
ANR
45
0.71%
CHS
43
0.68%
LAC
40
0.63%
GS
38
0.6%
CYP90D1
36
0.57%
F3'5'H/CYP75A
35
0.55%
IFR
35
0.55%
CCR
35
0.55%
IO
34
0.54%
NCS
32
0.5%
BBE
32
0.5%
BR6OX1/CYP85A1
29
0.46%
LAMT
28
0.44%
F5H/CYP84A
27
0.43%
CNMT
26
0.41%
AACT
20
0.32%
8HGO
19
0.3%
CYP719
18
0.28%
TYDC_DDC
17
0.27%
CPD/CYP90A1
17
0.27%
FPPS
17
0.27%
ANS/LDOX
15
0.24%
CYP80B1
14
0.22%
7DLH
13
0.2%
TAT
13
0.2%
CYP80F1
12
0.19%
COR
12
0.19%
DFR
11
0.17%
CPR
11
0.17%
SMO1/SMO2
11
0.17%
CCoAOMT
10
0.16%
HPPR
10
0.16%
MVK
9
0.14%
XMT_MXMT_DXMT
8
0.13%
GGPPS
8
0.13%
ADC
7
0.11%
FLS
7
0.11%
ROT3/CYP90C1
7
0.11%
MPO
6
0.09%
6OMT_4OMT_SOMT
6
0.09%
HMGR
6
0.09%
DWF1
5
0.08%
SQS/FDFT1
5
0.08%
IDI
5
0.08%
HMGS
5
0.08%
TDC
4
0.06%
ISY
4
0.06%
DET2
4
0.06%
MCT/IspD
4
0.06%
MVD
4
0.06%
ODC
3
0.05%
SQE
3
0.05%
HYD1
3
0.05%
DXS
3
0.05%
MDS/IspF
3
0.05%
HDS/IspG
3
0.05%
CHI
2
0.03%
DWF7
2
0.03%
DXR
2
0.03%
CMK/IspE
2
0.03%
FK
1
0.02%
DWF5
1
0.02%
CPI1
1
0.02%
PMK
1
0.02%
HDR/IspH
1
0.02%
Species Pathway Results
The links below show identification results for this species within each pathway, instead of opening the global pathway overview.
| Pathway | Pathway-Level Records | Detected Families | Top family | Results |
|---|---|---|---|---|
| Terpenoid pathway | 729 | 20 | BAHD (263) | View species results |
| Alkaloid pathway | 589 | 23 | 7DLGT (118) | View species results |
| Phenylpropanoid pathway | 488 | 11 | POD (247) | View species results |
| Flavonoid pathway | 372 | 12 | UFGT (238) | View species results |
| Rosmarinic acid pathway | 217 | 7 | C4H (114) | View species results |
| Steroid pathway | 114 | 12 | SMT1/SMT2/SMT3 (53) | View species results |
Broad Catalytic Groups
P450/oxygenase and BAHD/acyltransferase are counted separately as broad catalytic groups and are not mixed into the canonical enzyme-family count.
| Catalytic group | Detected families | Assignment calls | Included families |
|---|---|---|---|
| P450/oxygenase | 24 | 2623 | 7DLH, BR6OX1/CYP85A1, BR6OX2/CYP85A2, C3'H/CYP98A, C4H, CPD/CYP90A1, CYP51G1, CYP71, CYP719, CYP76, CYP80B1, CYP80F1, CYP90D1, DWF4/CYP90B1, F3'5'H/CYP75A, F3'H/CYP75B, F5H/CYP84A, G8O/G8H, IFS, IO, ROT3/CYP90C1, SLS, T16H, T3O |
| BAHD/acyltransferase | 3 | 467 | BAHD, HCT, RAS |
Identification Result List
Search the public protein/isoform identification results for this species; click pathway or family legends above to narrow within this species.
| Protein/Isoform Record | Pathway | Family | Confidence | Status |
|---|---|---|---|---|
| AatlScoFOjO_1702_23380064670.1 | Alkaloid | LAMT | medium | borderline |
| AatlScoFOjO_1702_23380065480.1 | Alkaloid | LAMT | medium | borderline |
| AatlScoFOjO_1702_23380118210.1 | Alkaloid | LAMT | low | borderline |
| AatlScoFOjO_1760_23990142460.1 | Alkaloid | LAMT | medium | borderline |
| AatlScoFOjO_1760_23990142520.1 | Alkaloid | LAMT | medium | borderline |
| AatlScoFOjO_1760_23990142530.1 | Alkaloid | LAMT | medium | borderline |
| AatlScoFOjO_1760_23990156630.1 | Alkaloid | LAMT | medium | borderline |
| AatlScoFOjO_1760_23990160860.1 | Alkaloid | LAMT | medium | borderline |
| AatlScoFOjO_1760_23990169800.1 | Alkaloid | LAMT | medium | borderline |
| AatlScoFOjO_1760_23990172020.1 | Alkaloid | LAMT | medium | borderline |
| AatlScoFOjO_1760_23990174710.1 | Alkaloid | LAMT | medium | borderline |
| AatlScoFOjO_1760_23990188690.1 | Alkaloid | LAMT | medium | borderline |
| AatlScoFOjO_2069_27320261210.1 | Alkaloid | LAMT | medium | borderline |
| AatlScoFOjO_324_4490369710.1 | Alkaloid | LAMT | medium | borderline |
| AatlScoFOjO_324_4490370200.1 | Alkaloid | LAMT | medium | borderline |
| AatlScoFOjO_324_4490370210.1 | Alkaloid | LAMT | medium | borderline |
| AatlScoFOjO_324_4490373370.1 | Alkaloid | LAMT | medium | borderline |
| AatlScoFOjO_324_4490373440.1 | Alkaloid | LAMT | medium | borderline |
| AatlScoFOjO_324_4490373470.1 | Alkaloid | LAMT | medium | borderline |
| AatlScoFOjO_324_4490388160.1 | Alkaloid | LAMT | medium | borderline |
| AatlScoFOjO_324_4490388200.1 | Alkaloid | LAMT | medium | borderline |
| AatlScoFOjO_350_4830390260.1 | Alkaloid | LAMT | medium | borderline |
| AatlScoFOjO_350_4830390270.1 | Alkaloid | LAMT | medium | borderline |
| AatlScoFOjO_350_4830390280.1 | Alkaloid | LAMT | medium | borderline |
| AatlScoFOjO_350_4830390290.1 | Alkaloid | LAMT | medium | borderline |
| AatlScoFOjO_1310_17880023570.1 | Alkaloid | MPO | medium | pass |
| AatlScoFOjO_1702_23380083530.1 | Alkaloid | MPO | low | borderline |
| AatlScoFOjO_1702_23380086730.1 | Alkaloid | MPO | low | borderline |
| AatlScoFOjO_1760_23990163260.1 | Alkaloid | MPO | high | pass |
| AatlScoFOjO_1760_23990178990.1 | Alkaloid | MPO | high | pass |
| AatlScoFOjO_2069_27320310050.1 | Alkaloid | MPO | medium | pass |
| AatlScoFOjO_1310_17880006260.1 | Alkaloid | NCS | medium | borderline |
| AatlScoFOjO_1310_17880006270.1 | Alkaloid | NCS | medium | borderline |
| AatlScoFOjO_1310_17880012980.1 | Alkaloid | NCS | medium | pass |
| AatlScoFOjO_1310_17880019360.1 | Alkaloid | NCS | medium | borderline |
| AatlScoFOjO_1310_17880023610.1 | Alkaloid | NCS | medium | borderline |
| AatlScoFOjO_1310_17880055950.1 | Alkaloid | NCS | medium | borderline |
| AatlScoFOjO_1702_23380092140.1 | Alkaloid | NCS | medium | borderline |
| AatlScoFOjO_1702_23380105860.1 | Alkaloid | NCS | medium | borderline |
| AatlScoFOjO_1702_23380127730.1 | Alkaloid | NCS | medium | pass |
| AatlScoFOjO_1760_23990157530.1 | Alkaloid | NCS | medium | pass |
| AatlScoFOjO_1760_23990180280.1 | Alkaloid | NCS | medium | pass |
| AatlScoFOjO_1760_23990180290.1 | Alkaloid | NCS | medium | pass |
| AatlScoFOjO_2050_27120200670.1 | Alkaloid | NCS | medium | borderline |
| AatlScoFOjO_2050_27120201010.1 | Alkaloid | NCS | medium | borderline |
| AatlScoFOjO_2050_27120201720.1 | Alkaloid | NCS | medium | borderline |
| AatlScoFOjO_2069_27320274570.1 | Alkaloid | NCS | medium | borderline |
| AatlScoFOjO_2069_27320310850.1 | Alkaloid | NCS | medium | borderline |
| AatlScoFOjO_2069_27320310860.1 | Alkaloid | NCS | medium | borderline |
| AatlScoFOjO_2069_27320314320.1 | Alkaloid | NCS | medium | borderline |