PlantSME Plant secondary metabolism enzyme database

Bartramia ithyphylla (bartramia_ithyphylla)

Imported from atlas release summary for Bartramia ithyphylla.

652
Candidate Genes
103
Families
6
Pathways
Phylogenetic Position
The current species is positioned within the lineage framework used by this site. Its taxon group is highlighted below.
Algae
Site group 29
Bryophytes
Current group 125
Lycophytes/Ferns
Site group 4
Gymnosperms
Site group 6
Basal angiosperms
Site group 13
Monocots
Site group 117
Eudicots
Site group 495
Species Metadata
Taxon group
Bryophytes
Genome status
Genome-level resource available
Site Placement
  • This page summarizes pathway coverage, family distributions, and the gene list for the species within the current public dataset.
  • If you want to start from the public overview first, open the homepage and then return here for species-level drill-down.
  • Family statistics correspond to enzyme families, while pathway statistics correspond to the real category-level pathways.
Pathway Coverage
Phenylpropanoid pathway 25.77% Terpenoid pathway 24.69% Alkaloid pathway 20.86% Flavonoid pathway 13.34% Rosmarinic acid pathway 10.28% Steroid pathway 5.06%
Family Distribution
C4H 6.68% C3'H/CYP98A 5.59% BAHD 5.24% POD 4.9% 4CL 4.84% CYP76 4.38% NMT 3.69% IFS 2.71%
Other Families 61.98%
More Families (95)
DWF4/CYP90B1 41 2.36% BR6OX2/CYP85A2 41 2.36% F3H 40 2.3% T3O 39 2.25% STR 39 2.25% F3'H/CYP75B 37 2.13% UGT 36 2.07% IFR 35 2.02% PYKS 34 1.96% GS 33 1.9% 7DLGT 33 1.9% UFGT 32 1.84% PAL 30 1.73% CODM/T6ODM 24 1.38% CAD 22 1.27% CHS 21 1.21% IO 19 1.09% H6H 19 1.09% TRI/TRII 19 1.09% SMT1/SMT2/SMT3 19 1.09% CYP71 19 1.09% T16H 18 1.04% F3'5'H/CYP75A 18 1.04% LAC 18 1.04% COMT 17 0.98% RAS 16 0.92% HCT 15 0.86% SLS 14 0.81% NCS 13 0.75% 7DLH 12 0.69% CYP90D1 12 0.69% CAS 12 0.69% G8O/G8H 11 0.63% F5H/CYP84A 11 0.63% CYP80B1 10 0.58% CNMT 10 0.58% 8HGO 9 0.52% SGD 9 0.52% ANR 9 0.52% FNS 9 0.52% CSE 9 0.52% CPD/CYP90A1 9 0.52% PMT 8 0.46% 16OMT 8 0.46% COR 8 0.46% LAMT 7 0.4% AACT 7 0.4% TYDC_DDC 6 0.35% DFR 6 0.35% CCR 6 0.35% SQS/FDFT1 6 0.35% TPS 6 0.35% TDC 5 0.29% BBE 5 0.29% ISY 5 0.29% ANS/LDOX 5 0.29% CPR 5 0.29% GGPPS 5 0.29% HDS/IspG 5 0.29% HDR/IspH 5 0.29% MPO 4 0.23% FLS 4 0.23% BR6OX1/CYP85A1 4 0.23% DWF5 4 0.23% SQE 4 0.23% ROT3/CYP90C1 4 0.23% DET2 4 0.23% FPPS 4 0.23% MVK 4 0.23% DXR 3 0.17% ADC 2 0.12% CYP80F1 2 0.12% GES 2 0.12% CYP719 2 0.12% CHI 2 0.12% TAT 2 0.12% SMO1/SMO2 2 0.12% DXS 2 0.12% MCT/IspD 2 0.12% HMGR 2 0.12% MVD 2 0.12% 6OMT_4OMT_SOMT 1 0.06% CCoAOMT 1 0.06% HPPR 1 0.06% CYP51G1 1 0.06% DWF1 1 0.06% CPI1 1 0.06% FK 1 0.06% DWF7 1 0.06% HYD1 1 0.06% PMK 1 0.06% MDS/IspF 1 0.06% CMK/IspE 1 0.06% IDI 1 0.06% HMGS 1 0.06%
Species Pathway Results
The links below show identification results for this species within each pathway, instead of opening the global pathway overview.
Pathway Candidate Genes Families Top family Results
Phenylpropanoid pathway 168 12 POD (80) View species results
Terpenoid pathway 161 19 BAHD (59) View species results
Alkaloid pathway 136 19 NMT (26) View species results
Flavonoid pathway 87 10 UFGT (29) View species results
Rosmarinic acid pathway 67 7 C4H (31) View species results
Steroid pathway 33 12 CAS (11) View species results
Broad Catalytic Groups
P450/oxygenase and BAHD/acyltransferase are counted separately as broad catalytic groups and are not mixed into the canonical enzyme-family count.
Catalytic group Families Candidate genes Included families
P450/oxygenase 24 660 7DLH, BR6OX1/CYP85A1, BR6OX2/CYP85A2, C3'H/CYP98A, C4H, CPD/CYP90A1, CYP51G1, CYP71, CYP719, CYP76, CYP80B1, CYP80F1, CYP90D1, DWF4/CYP90B1, F3'5'H/CYP75A, F3'H/CYP75B, F5H/CYP84A, G8O/G8H, IFS, IO, ROT3/CYP90C1, SLS, T16H, T3O
BAHD/acyltransferase 3 122 BAHD, HCT, RAS
Identification Result List
Search the public identification results for this species; click pathway or family legends above to narrow within this species.
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Gene Pathway Family Confidence Status
Bith00000620 Phenylpropanoid HCT low borderline
Bith130024630 Phenylpropanoid HCT medium pass
Bith1480034510 Phenylpropanoid HCT low borderline
Bith1690067210 Phenylpropanoid HCT medium pass
Bith1770073260 Phenylpropanoid HCT medium pass
Bith1770076330 Phenylpropanoid HCT medium pass
Bith1920089070 Phenylpropanoid HCT medium pass
Bith20100900 Phenylpropanoid HCT low borderline
Bith2270122260 Phenylpropanoid HCT medium pass
Bith2670156250 Phenylpropanoid HCT medium pass
Bith2670157250 Phenylpropanoid HCT low borderline
Bith40192270 Phenylpropanoid HCT medium pass
Bith680221150 Phenylpropanoid HCT medium pass
Bith70227360 Phenylpropanoid HCT low borderline
Bith720235870 Phenylpropanoid HCT low borderline