PlantSME Plant secondary metabolism enzyme database

Bartramia ithyphylla (bartramia_ithyphylla)

Imported from atlas release summary for Bartramia ithyphylla.

652
Candidate Genes
103
Families
6
Pathways
Phylogenetic Position
The current species is positioned within the lineage framework used by this site. Its taxon group is highlighted below.
Algae
Site group 29
Bryophytes
Current group 125
Lycophytes/Ferns
Site group 4
Gymnosperms
Site group 6
Basal angiosperms
Site group 13
Monocots
Site group 117
Eudicots
Site group 495
Species Metadata
Taxon group
Bryophytes
Genome status
Genome-level resource available
Site Placement
  • This page summarizes pathway coverage, family distributions, and the gene list for the species within the current public dataset.
  • If you want to start from the public overview first, open the homepage and then return here for species-level drill-down.
  • Family statistics correspond to enzyme families, while pathway statistics correspond to the real category-level pathways.
Pathway Coverage
Phenylpropanoid pathway 25.77% Terpenoid pathway 24.69% Alkaloid pathway 20.86% Flavonoid pathway 13.34% Rosmarinic acid pathway 10.28% Steroid pathway 5.06%
Family Distribution
C4H 6.68% C3'H/CYP98A 5.59% BAHD 5.24% POD 4.9% 4CL 4.84% CYP76 4.38% NMT 3.69% IFS 2.71%
Other Families 61.98%
More Families (95)
DWF4/CYP90B1 41 2.36% BR6OX2/CYP85A2 41 2.36% F3H 40 2.3% T3O 39 2.25% STR 39 2.25% F3'H/CYP75B 37 2.13% UGT 36 2.07% IFR 35 2.02% PYKS 34 1.96% GS 33 1.9% 7DLGT 33 1.9% UFGT 32 1.84% PAL 30 1.73% CODM/T6ODM 24 1.38% CAD 22 1.27% CHS 21 1.21% IO 19 1.09% H6H 19 1.09% TRI/TRII 19 1.09% SMT1/SMT2/SMT3 19 1.09% CYP71 19 1.09% T16H 18 1.04% F3'5'H/CYP75A 18 1.04% LAC 18 1.04% COMT 17 0.98% RAS 16 0.92% HCT 15 0.86% SLS 14 0.81% NCS 13 0.75% 7DLH 12 0.69% CYP90D1 12 0.69% CAS 12 0.69% G8O/G8H 11 0.63% F5H/CYP84A 11 0.63% CYP80B1 10 0.58% CNMT 10 0.58% 8HGO 9 0.52% SGD 9 0.52% ANR 9 0.52% FNS 9 0.52% CSE 9 0.52% CPD/CYP90A1 9 0.52% PMT 8 0.46% 16OMT 8 0.46% COR 8 0.46% LAMT 7 0.4% AACT 7 0.4% TYDC_DDC 6 0.35% DFR 6 0.35% CCR 6 0.35% SQS/FDFT1 6 0.35% TPS 6 0.35% TDC 5 0.29% BBE 5 0.29% ISY 5 0.29% ANS/LDOX 5 0.29% CPR 5 0.29% GGPPS 5 0.29% HDS/IspG 5 0.29% HDR/IspH 5 0.29% MPO 4 0.23% FLS 4 0.23% BR6OX1/CYP85A1 4 0.23% DWF5 4 0.23% SQE 4 0.23% ROT3/CYP90C1 4 0.23% DET2 4 0.23% FPPS 4 0.23% MVK 4 0.23% DXR 3 0.17% ADC 2 0.12% CYP80F1 2 0.12% GES 2 0.12% CYP719 2 0.12% CHI 2 0.12% TAT 2 0.12% SMO1/SMO2 2 0.12% DXS 2 0.12% MCT/IspD 2 0.12% HMGR 2 0.12% MVD 2 0.12% 6OMT_4OMT_SOMT 1 0.06% CCoAOMT 1 0.06% HPPR 1 0.06% CYP51G1 1 0.06% DWF1 1 0.06% CPI1 1 0.06% FK 1 0.06% DWF7 1 0.06% HYD1 1 0.06% PMK 1 0.06% MDS/IspF 1 0.06% CMK/IspE 1 0.06% IDI 1 0.06% HMGS 1 0.06%
Species Pathway Results
The links below show identification results for this species within each pathway, instead of opening the global pathway overview.
Pathway Candidate Genes Families Top family Results
Phenylpropanoid pathway 168 12 POD (80) View species results
Terpenoid pathway 161 19 BAHD (59) View species results
Alkaloid pathway 136 19 NMT (26) View species results
Flavonoid pathway 87 10 UFGT (29) View species results
Rosmarinic acid pathway 67 7 C4H (31) View species results
Steroid pathway 33 12 CAS (11) View species results
Broad Catalytic Groups
P450/oxygenase and BAHD/acyltransferase are counted separately as broad catalytic groups and are not mixed into the canonical enzyme-family count.
Catalytic group Families Candidate genes Included families
P450/oxygenase 24 660 7DLH, BR6OX1/CYP85A1, BR6OX2/CYP85A2, C3'H/CYP98A, C4H, CPD/CYP90A1, CYP51G1, CYP71, CYP719, CYP76, CYP80B1, CYP80F1, CYP90D1, DWF4/CYP90B1, F3'5'H/CYP75A, F3'H/CYP75B, F5H/CYP84A, G8O/G8H, IFS, IO, ROT3/CYP90C1, SLS, T16H, T3O
BAHD/acyltransferase 3 122 BAHD, HCT, RAS
Identification Result List
Search the public identification results for this species; click pathway or family legends above to narrow within this species.
Current family filter: IO
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Gene Pathway Family Confidence Status
Bith100012660 Alkaloid IO medium borderline
Bith130026560 Alkaloid IO medium borderline
Bith1660061530 Alkaloid IO medium borderline
Bith1690067360 Alkaloid IO medium borderline
Bith1770072580 Alkaloid IO medium borderline
Bith1770072900 Alkaloid IO medium borderline
Bith2430133700 Alkaloid IO medium borderline
Bith2690161930 Alkaloid IO low borderline
Bith50199860 Alkaloid IO medium borderline
Bith580203670 Alkaloid IO medium borderline
Bith60207910 Alkaloid IO low borderline
Bith620390215340 Alkaloid IO low borderline
Bith70225030 Alkaloid IO medium borderline
Bith710229760 Alkaloid IO low borderline
Bith830270244380 Alkaloid IO medium borderline
Bith923900260250 Alkaloid IO low borderline
Bith990264530 Alkaloid IO medium borderline
Bith990264570 Alkaloid IO medium borderline
Bith990265770 Alkaloid IO medium borderline