Bartramia ithyphylla (bartramia_ithyphylla)
Imported from atlas release summary for Bartramia ithyphylla.
652
Candidate Genes
103
Families
6
Pathways
Phylogenetic Position
The current species is positioned within the lineage framework used by this site. Its taxon group is highlighted below.
Species Metadata
Taxon group
Bryophytes
Genome status
Genome-level resource available
Site Placement
- This page summarizes pathway coverage, family distributions, and the gene list for the species within the current public dataset.
- If you want to start from the public overview first, open the homepage and then return here for species-level drill-down.
- Family statistics correspond to enzyme families, while pathway statistics correspond to the real category-level pathways.
Pathway Coverage
6
Pathways
Family Distribution
652
Candidate Genes
C4H
6.68%
C3'H/CYP98A
5.59%
BAHD
5.24%
POD
4.9%
4CL
4.84%
CYP76
4.38%
NMT
3.69%
IFS
2.71%
Other Families
61.98%
More Families (95)
DWF4/CYP90B1
41
2.36%
BR6OX2/CYP85A2
41
2.36%
F3H
40
2.3%
T3O
39
2.25%
STR
39
2.25%
F3'H/CYP75B
37
2.13%
UGT
36
2.07%
IFR
35
2.02%
PYKS
34
1.96%
GS
33
1.9%
7DLGT
33
1.9%
UFGT
32
1.84%
PAL
30
1.73%
CODM/T6ODM
24
1.38%
CAD
22
1.27%
CHS
21
1.21%
IO
19
1.09%
H6H
19
1.09%
TRI/TRII
19
1.09%
SMT1/SMT2/SMT3
19
1.09%
CYP71
19
1.09%
T16H
18
1.04%
F3'5'H/CYP75A
18
1.04%
LAC
18
1.04%
COMT
17
0.98%
RAS
16
0.92%
HCT
15
0.86%
SLS
14
0.81%
NCS
13
0.75%
7DLH
12
0.69%
CYP90D1
12
0.69%
CAS
12
0.69%
G8O/G8H
11
0.63%
F5H/CYP84A
11
0.63%
CYP80B1
10
0.58%
CNMT
10
0.58%
8HGO
9
0.52%
SGD
9
0.52%
ANR
9
0.52%
FNS
9
0.52%
CSE
9
0.52%
CPD/CYP90A1
9
0.52%
PMT
8
0.46%
16OMT
8
0.46%
COR
8
0.46%
LAMT
7
0.4%
AACT
7
0.4%
TYDC_DDC
6
0.35%
DFR
6
0.35%
CCR
6
0.35%
SQS/FDFT1
6
0.35%
TPS
6
0.35%
TDC
5
0.29%
BBE
5
0.29%
ISY
5
0.29%
ANS/LDOX
5
0.29%
CPR
5
0.29%
GGPPS
5
0.29%
HDS/IspG
5
0.29%
HDR/IspH
5
0.29%
MPO
4
0.23%
FLS
4
0.23%
BR6OX1/CYP85A1
4
0.23%
DWF5
4
0.23%
SQE
4
0.23%
ROT3/CYP90C1
4
0.23%
DET2
4
0.23%
FPPS
4
0.23%
MVK
4
0.23%
DXR
3
0.17%
ADC
2
0.12%
CYP80F1
2
0.12%
GES
2
0.12%
CYP719
2
0.12%
CHI
2
0.12%
TAT
2
0.12%
SMO1/SMO2
2
0.12%
DXS
2
0.12%
MCT/IspD
2
0.12%
HMGR
2
0.12%
MVD
2
0.12%
6OMT_4OMT_SOMT
1
0.06%
CCoAOMT
1
0.06%
HPPR
1
0.06%
CYP51G1
1
0.06%
DWF1
1
0.06%
CPI1
1
0.06%
FK
1
0.06%
DWF7
1
0.06%
HYD1
1
0.06%
PMK
1
0.06%
MDS/IspF
1
0.06%
CMK/IspE
1
0.06%
IDI
1
0.06%
HMGS
1
0.06%
Species Pathway Results
The links below show identification results for this species within each pathway, instead of opening the global pathway overview.
| Pathway | Candidate Genes | Families | Top family | Results |
|---|---|---|---|---|
| Phenylpropanoid pathway | 168 | 12 | POD (80) | View species results |
| Terpenoid pathway | 161 | 19 | BAHD (59) | View species results |
| Alkaloid pathway | 136 | 19 | NMT (26) | View species results |
| Flavonoid pathway | 87 | 10 | UFGT (29) | View species results |
| Rosmarinic acid pathway | 67 | 7 | C4H (31) | View species results |
| Steroid pathway | 33 | 12 | CAS (11) | View species results |
Broad Catalytic Groups
P450/oxygenase and BAHD/acyltransferase are counted separately as broad catalytic groups and are not mixed into the canonical enzyme-family count.
| Catalytic group | Families | Candidate genes | Included families |
|---|---|---|---|
| P450/oxygenase | 24 | 660 | 7DLH, BR6OX1/CYP85A1, BR6OX2/CYP85A2, C3'H/CYP98A, C4H, CPD/CYP90A1, CYP51G1, CYP71, CYP719, CYP76, CYP80B1, CYP80F1, CYP90D1, DWF4/CYP90B1, F3'5'H/CYP75A, F3'H/CYP75B, F5H/CYP84A, G8O/G8H, IFS, IO, ROT3/CYP90C1, SLS, T16H, T3O |
| BAHD/acyltransferase | 3 | 122 | BAHD, HCT, RAS |
Identification Result List
Search the public identification results for this species; click pathway or family legends above to narrow within this species.
Current family filter: STR
| Gene | Pathway | Family | Confidence | Status | Best Target |
|---|---|---|---|---|---|
| Bith10003160 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| Bith10009320 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| Bith1070019200 | Alkaloid | STR | medium | pass | STR__00003__sp_Q9M1B4_SSL13_ARATH |
| Bith130025620 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| Bith130027250 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| Bith130031680 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| Bith1480036560 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| Bith1480039410 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| Bith1510043380 | Alkaloid | STR | medium | pass | STR__00003__sp_Q9M1B4_SSL13_ARATH |
| Bith1570048820 | Alkaloid | STR | medium | pass | STR__00001__sp_D3GE74_STR1_MEDTR |
| Bith1600057260 | Alkaloid | STR | medium | pass | STR__00003__sp_Q9M1B4_SSL13_ARATH |
| Bith1660060980 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| Bith1690069510 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| Bith1690069540 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| Bith1840084360 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| Bith1970097380 | Alkaloid | STR | medium | pass | STR__00001__sp_D3GE74_STR1_MEDTR |
| Bith2190108400 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| Bith2290123030 | Alkaloid | STR | medium | pass | STR__00003__sp_Q9M1B4_SSL13_ARATH |
| Bith2560139470 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| Bith2560141940 | Alkaloid | STR | medium | pass | STR__00003__sp_Q9M1B4_SSL13_ARATH |
| Bith2580146920 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| Bith2680160030 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| Bith290165910 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| Bith290165920 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| Bith290166840 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| Bith2910167380 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| Bith2910168810 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| Bith30171390 | Alkaloid | STR | medium | pass | STR__00001__sp_D3GE74_STR1_MEDTR |
| Bith320173060 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| Bith3220177930 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| Bith3220178670 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| Bith3470187760 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| Bith500202450 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| Bith640217010 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| Bith670218920 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| Bith70223550 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| Bith70226930 | Alkaloid | STR | medium | pass | STR__00003__sp_Q9M1B4_SSL13_ARATH |
| Bith710231770 | Alkaloid | STR | medium | pass | STR__00003__sp_Q9M1B4_SSL13_ARATH |
| Bith990266820 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |