PlantSME Plant secondary metabolism enzyme database

Bartramia ithyphylla (bartramia_ithyphylla)

Imported from atlas release summary for Bartramia ithyphylla.

652
Candidate Genes
103
Families
6
Pathways
Phylogenetic Position
The current species is positioned within the lineage framework used by this site. Its taxon group is highlighted below.
Algae
Site group 29
Bryophytes
Current group 125
Lycophytes/Ferns
Site group 4
Gymnosperms
Site group 6
Basal angiosperms
Site group 13
Monocots
Site group 117
Eudicots
Site group 495
Species Metadata
Taxon group
Bryophytes
Genome status
Genome-level resource available
Site Placement
  • This page summarizes pathway coverage, family distributions, and the gene list for the species within the current public dataset.
  • If you want to start from the public overview first, open the homepage and then return here for species-level drill-down.
  • Family statistics correspond to enzyme families, while pathway statistics correspond to the real category-level pathways.
Pathway Coverage
Phenylpropanoid pathway 25.77% Terpenoid pathway 24.69% Alkaloid pathway 20.86% Flavonoid pathway 13.34% Rosmarinic acid pathway 10.28% Steroid pathway 5.06%
Family Distribution
C4H 6.68% C3'H/CYP98A 5.59% BAHD 5.24% POD 4.9% 4CL 4.84% CYP76 4.38% NMT 3.69% IFS 2.71%
Other Families 61.98%
More Families (95)
DWF4/CYP90B1 41 2.36% BR6OX2/CYP85A2 41 2.36% F3H 40 2.3% T3O 39 2.25% STR 39 2.25% F3'H/CYP75B 37 2.13% UGT 36 2.07% IFR 35 2.02% PYKS 34 1.96% GS 33 1.9% 7DLGT 33 1.9% UFGT 32 1.84% PAL 30 1.73% CODM/T6ODM 24 1.38% CAD 22 1.27% CHS 21 1.21% IO 19 1.09% H6H 19 1.09% TRI/TRII 19 1.09% SMT1/SMT2/SMT3 19 1.09% CYP71 19 1.09% T16H 18 1.04% F3'5'H/CYP75A 18 1.04% LAC 18 1.04% COMT 17 0.98% RAS 16 0.92% HCT 15 0.86% SLS 14 0.81% NCS 13 0.75% 7DLH 12 0.69% CYP90D1 12 0.69% CAS 12 0.69% G8O/G8H 11 0.63% F5H/CYP84A 11 0.63% CYP80B1 10 0.58% CNMT 10 0.58% 8HGO 9 0.52% SGD 9 0.52% ANR 9 0.52% FNS 9 0.52% CSE 9 0.52% CPD/CYP90A1 9 0.52% PMT 8 0.46% 16OMT 8 0.46% COR 8 0.46% LAMT 7 0.4% AACT 7 0.4% TYDC_DDC 6 0.35% DFR 6 0.35% CCR 6 0.35% SQS/FDFT1 6 0.35% TPS 6 0.35% TDC 5 0.29% BBE 5 0.29% ISY 5 0.29% ANS/LDOX 5 0.29% CPR 5 0.29% GGPPS 5 0.29% HDS/IspG 5 0.29% HDR/IspH 5 0.29% MPO 4 0.23% FLS 4 0.23% BR6OX1/CYP85A1 4 0.23% DWF5 4 0.23% SQE 4 0.23% ROT3/CYP90C1 4 0.23% DET2 4 0.23% FPPS 4 0.23% MVK 4 0.23% DXR 3 0.17% ADC 2 0.12% CYP80F1 2 0.12% GES 2 0.12% CYP719 2 0.12% CHI 2 0.12% TAT 2 0.12% SMO1/SMO2 2 0.12% DXS 2 0.12% MCT/IspD 2 0.12% HMGR 2 0.12% MVD 2 0.12% 6OMT_4OMT_SOMT 1 0.06% CCoAOMT 1 0.06% HPPR 1 0.06% CYP51G1 1 0.06% DWF1 1 0.06% CPI1 1 0.06% FK 1 0.06% DWF7 1 0.06% HYD1 1 0.06% PMK 1 0.06% MDS/IspF 1 0.06% CMK/IspE 1 0.06% IDI 1 0.06% HMGS 1 0.06%
Species Pathway Results
The links below show identification results for this species within each pathway, instead of opening the global pathway overview.
Pathway Candidate Genes Families Top family Results
Phenylpropanoid pathway 168 12 POD (80) View species results
Terpenoid pathway 161 19 BAHD (59) View species results
Alkaloid pathway 136 19 NMT (26) View species results
Flavonoid pathway 87 10 UFGT (29) View species results
Rosmarinic acid pathway 67 7 C4H (31) View species results
Steroid pathway 33 12 CAS (11) View species results
Broad Catalytic Groups
P450/oxygenase and BAHD/acyltransferase are counted separately as broad catalytic groups and are not mixed into the canonical enzyme-family count.
Catalytic group Families Candidate genes Included families
P450/oxygenase 24 660 7DLH, BR6OX1/CYP85A1, BR6OX2/CYP85A2, C3'H/CYP98A, C4H, CPD/CYP90A1, CYP51G1, CYP71, CYP719, CYP76, CYP80B1, CYP80F1, CYP90D1, DWF4/CYP90B1, F3'5'H/CYP75A, F3'H/CYP75B, F5H/CYP84A, G8O/G8H, IFS, IO, ROT3/CYP90C1, SLS, T16H, T3O
BAHD/acyltransferase 3 122 BAHD, HCT, RAS
Identification Result List
Search the public identification results for this species; click pathway or family legends above to narrow within this species.
Current pathway filter: Phenylpropanoid pathway
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Gene Pathway Family Confidence Status Best Target
Bith290166400 Phenylpropanoid POD medium pass POD__00010__sp_P84516_PER1_SORBI
Bith320172900 Phenylpropanoid POD medium pass POD__00021__sp_Q9LEH3_PER15_IPOBA
Bith320174290 Phenylpropanoid POD medium pass POD__00008__sp_P52574_REHY_SYNRU
Bith320174800 Phenylpropanoid POD medium pass POD__00028__sp_Q9ZVD5_AGO4_ARATH
Bith3220177990 Phenylpropanoid POD medium pass POD__00027__sp_Q9XIV8_PERN1_TOBAC
Bith3220178000 Phenylpropanoid POD medium pass POD__00021__sp_Q9LEH3_PER15_IPOBA
Bith3310181640 Phenylpropanoid POD medium pass POD__00006__sp_O22850_GPX3_ARATH
Bith3470187380 Phenylpropanoid POD medium pass POD__00012__sp_Q10N21_APX1_ORYSJ
Bith3470188330 Phenylpropanoid POD medium pass POD__00006__sp_O22850_GPX3_ARATH
Bith3470189360 Phenylpropanoid POD medium pass POD__00003__sp_A9PCL4_PRX2_POPTR
Bith410193540 Phenylpropanoid POD medium pass POD__00003__sp_A9PCL4_PRX2_POPTR
Bith50198590 Phenylpropanoid POD medium pass POD__00027__sp_Q9XIV8_PERN1_TOBAC
Bith50199640 Phenylpropanoid POD medium pass POD__00021__sp_Q9LEH3_PER15_IPOBA
Bith60205010 Phenylpropanoid POD medium pass POD__00024__sp_Q9SCX8_PPA17_ARATH
Bith683730221670 Phenylpropanoid POD medium pass POD__00002__sp_A5H8G4_PER1_MAIZE
Bith690221750 Phenylpropanoid POD medium pass POD__00021__sp_Q9LEH3_PER15_IPOBA
Bith70223240 Phenylpropanoid POD low borderline POD__00016__sp_Q6QPJ6_PRXQ_POPJC
Bith880248590 Phenylpropanoid POD medium pass POD__00021__sp_Q9LEH3_PER15_IPOBA
Bith90251870 Phenylpropanoid POD medium pass POD__00002__sp_A5H8G4_PER1_MAIZE
Bith90253450 Phenylpropanoid POD medium pass POD__00023__sp_Q9M7T0_PRX2F_ARATH
Bith90254350 Phenylpropanoid POD medium pass POD__00027__sp_Q9XIV8_PERN1_TOBAC
Bith925380261180 Phenylpropanoid POD medium pass POD__00027__sp_Q9XIV8_PERN1_TOBAC
Bith990264960 Phenylpropanoid POD medium pass POD__00026__sp_Q9XEX2_PRX2B_ARATH
Bith990265010 Phenylpropanoid POD medium pass POD__00026__sp_Q9XEX2_PRX2B_ARATH
Bith990265840 Phenylpropanoid POD medium pass POD__00021__sp_Q9LEH3_PER15_IPOBA
Bith990266540 Phenylpropanoid POD medium pass POD__00013__sp_Q4W1I8_PER1_ZINEL