PlantSME Plant secondary metabolism enzyme database

Calliergonella cuspidata (calliergonella_cuspidata)

Imported from atlas release summary for Calliergonella cuspidata.

703
Candidate Genes
102
Families
6
Pathways
Phylogenetic Position
The current species is positioned within the lineage framework used by this site. Its taxon group is highlighted below.
Algae
Site group 29
Bryophytes
Current group 125
Lycophytes/Ferns
Site group 4
Gymnosperms
Site group 6
Basal angiosperms
Site group 13
Monocots
Site group 117
Eudicots
Site group 495
Species Metadata
Taxon group
Bryophytes
Genome status
Genome-level resource available
Site Placement
  • This page summarizes pathway coverage, family distributions, and the gene list for the species within the current public dataset.
  • If you want to start from the public overview first, open the homepage and then return here for species-level drill-down.
  • Family statistics correspond to enzyme families, while pathway statistics correspond to the real category-level pathways.
Pathway Coverage
Phenylpropanoid pathway 25.04% Terpenoid pathway 23.76% Alkaloid pathway 19.49% Flavonoid pathway 15.22% Rosmarinic acid pathway 10.81% Steroid pathway 5.69%
Family Distribution
C4H 7.49% C3'H/CYP98A 6.12% POD 5.08% BAHD 4.87% 4CL 4.76% CYP76 4.65% PAL 4.59% NMT 3.23%
Other Families 59.21%
More Families (94)
IFS 52 2.84% F3'H/CYP75B 51 2.79% PYKS 41 2.24% DWF4/CYP90B1 41 2.24% BR6OX2/CYP85A2 40 2.19% STR 37 2.02% T3O 37 2.02% IFR 36 1.97% F3H 35 1.91% GS 33 1.8% UGT 30 1.64% UFGT 29 1.59% CHS 29 1.59% 7DLGT 27 1.48% IO 26 1.42% CODM/T6ODM 22 1.2% CAD 22 1.2% SMT1/SMT2/SMT3 20 1.09% CYP90D1 19 1.04% 7DLH 18 0.98% TRI/TRII 18 0.98% SLS 18 0.98% CAS 17 0.93% T16H 16 0.87% G8O/G8H 15 0.82% H6H 15 0.82% COMT 15 0.82% CYP71 15 0.82% FNS 13 0.71% LAMT 12 0.66% CSE 12 0.66% NCS 11 0.6% F3'5'H/CYP75A 11 0.6% F5H/CYP84A 10 0.55% RAS 10 0.55% CPD/CYP90A1 10 0.55% 8HGO 9 0.49% CYP80B1 9 0.49% ANR 9 0.49% HCT 9 0.49% LAC 8 0.44% 16OMT 7 0.38% CNMT 7 0.38% SGD 7 0.38% COR 7 0.38% GGPPS 7 0.38% MPO 6 0.33% CCR 6 0.33% SQS/FDFT1 6 0.33% PMT 5 0.27% CYP719 5 0.27% TDC 5 0.27% BBE 5 0.27% CPR 5 0.27% TAT 5 0.27% AACT 5 0.27% MVD 5 0.27% DWF5 4 0.22% CYP51G1 4 0.22% BR6OX1/CYP85A1 4 0.22% HYD1 4 0.22% ROT3/CYP90C1 4 0.22% HDS/IspG 4 0.22% 6OMT_4OMT_SOMT 3 0.16% ADC 3 0.16% GES 3 0.16% FLS 3 0.16% CHI 3 0.16% SQE 3 0.16% DET2 3 0.16% MVK 3 0.16% FPPS 3 0.16% TPS 3 0.16% TYDC_DDC 2 0.11% DFR 2 0.11% SMO1/SMO2 2 0.11% DWF1 2 0.11% HMGS 2 0.11% HDR/IspH 2 0.11% MDS/IspF 2 0.11% MCT/IspD 2 0.11% ISY 1 0.05% ANS/LDOX 1 0.05% CCoAOMT 1 0.05% HPPR 1 0.05% CPI1 1 0.05% DWF7 1 0.05% FK 1 0.05% DXR 1 0.05% IDI 1 0.05% CMK/IspE 1 0.05% PMK 1 0.05% DXS 1 0.05% HMGR 1 0.05%
Species Pathway Results
The links below show identification results for this species within each pathway, instead of opening the global pathway overview.
Pathway Candidate Genes Families Top family Results
Phenylpropanoid pathway 176 11 POD (86) View species results
Terpenoid pathway 167 19 BAHD (65) View species results
Alkaloid pathway 137 18 PYKS (29) View species results
Flavonoid pathway 107 12 CHS (29) View species results
Rosmarinic acid pathway 76 7 PAL (26) View species results
Steroid pathway 40 12 CAS (14) View species results
Broad Catalytic Groups
P450/oxygenase and BAHD/acyltransferase are counted separately as broad catalytic groups and are not mixed into the canonical enzyme-family count.
Catalytic group Families Candidate genes Included families
P450/oxygenase 23 739 7DLH, BR6OX1/CYP85A1, BR6OX2/CYP85A2, C3'H/CYP98A, C4H, CPD/CYP90A1, CYP51G1, CYP71, CYP719, CYP76, CYP80B1, CYP90D1, DWF4/CYP90B1, F3'5'H/CYP75A, F3'H/CYP75B, F5H/CYP84A, G8O/G8H, IFS, IO, ROT3/CYP90C1, SLS, T16H, T3O
BAHD/acyltransferase 3 108 BAHD, HCT, RAS
Identification Result List
Search the public identification results for this species; click pathway or family legends above to narrow within this species.
Gene Pathway Family Confidence Status Best Target
Ccusscaffold_100040340 Alkaloid NMT low borderline NMT__00024__sp_P0CB22_ATX2_ARATH
Ccusscaffold_100040350 Alkaloid NMT low borderline NMT__00024__sp_P0CB22_ATX2_ARATH
Ccusscaffold_10004140 Alkaloid NMT medium pass NMT__00056__sp_Q9FNE9_ATXR6_ARATH
Ccusscaffold_100042020 Alkaloid NMT medium pass NMT__00066__sp_Q9SU94_ANM11_ARATH
Ccusscaffold_110042590 Alkaloid NMT medium borderline NMT__00007__sp_A0A6C0WX00_CKTBS_CAMSB
Ccusscaffold_110042870 Alkaloid NMT low borderline NMT__00023__sp_O82210_ANM12_ARATH
Ccusscaffold_110043460 Alkaloid NMT medium borderline NMT__00005__sp_A0A6C0WW36_CKTCS_CAMSB
Ccusscaffold_110049110 Alkaloid NMT low borderline NMT__00021__sp_O64827_SUVR5_ARATH
Ccusscaffold_110057130 Alkaloid NMT medium pass NMT__00046__sp_Q8VZ17_SUVH6_ARATH
Ccusscaffold_110057460 Alkaloid NMT medium pass NMT__00061__sp_Q9SAH5_PLMT_ARATH
Ccusscaffold_110057640 Alkaloid NMT medium pass NMT__00042__sp_Q8GZB6_SUVH4_ARATH
Ccusscaffold_110060940 Alkaloid NMT medium pass NMT__00016__sp_F4JNX3_CMKMT_ARATH
Ccusscaffold_130065760 Alkaloid NMT medium borderline NMT__00015__sp_C8YTM5_PEAM2_WHEAT
Ccusscaffold_20073880 Alkaloid NMT medium pass NMT__00041__sp_Q8GWT4_ANM15_ARATH
Ccusscaffold_20075970 Alkaloid NMT low borderline NMT__00028__sp_Q2LAE1_ASHH2_ARATH
Ccusscaffold_20080720 Alkaloid NMT medium pass NMT__00036__sp_Q6K9X3_NAMT1_ORYSJ
Ccusscaffold_20082520 Alkaloid NMT medium borderline NMT__00053__sp_Q9C6B9_PEAM3_ARATH
Ccusscaffold_20082640 Alkaloid NMT medium borderline NMT__00053__sp_Q9C6B9_PEAM3_ARATH
Ccusscaffold_290084300 Alkaloid NMT medium borderline NMT__00011__sp_A9X7L0_ANMT_RUTGR
Ccusscaffold_40092600 Alkaloid NMT low borderline NMT__00035__sp_Q6K431_TRX1_ORYSJ
Ccusscaffold_40095020 Alkaloid NMT medium pass NMT__00042__sp_Q8GZB6_SUVH4_ARATH
Ccusscaffold_40096360 Alkaloid NMT medium borderline NMT__00023__sp_O82210_ANM12_ARATH
Ccusscaffold_40112860 Alkaloid NMT low borderline NMT__00035__sp_Q6K431_TRX1_ORYSJ
Ccusscaffold_50132520 Alkaloid NMT medium pass NMT__00025__sp_P93831_CLF_ARATH
Ccusscaffold_50142860 Alkaloid NMT low borderline NMT__00021__sp_O64827_SUVR5_ARATH
Ccusscaffold_50148380 Alkaloid NMT medium borderline NMT__00057__sp_Q9FR44_PEAM1_ARATH
Ccusscaffold_50152600 Alkaloid NMT medium borderline NMT__00023__sp_O82210_ANM12_ARATH
Ccusscaffold_50153600 Alkaloid NMT low borderline NMT__00048__sp_Q8W595_SUVR4_ARATH
Ccusscaffold_50155070 Alkaloid NMT medium pass NMT__00048__sp_Q8W595_SUVR4_ARATH
Ccusscaffold_50155360 Alkaloid NMT medium pass NMT__00068__sp_Q9XI84_RBCMT_ARATH
Ccusscaffold_50156330 Alkaloid NMT medium pass NMT__00016__sp_F4JNX3_CMKMT_ARATH
Ccusscaffold_50156360 Alkaloid NMT medium pass NMT__00016__sp_F4JNX3_CMKMT_ARATH
Ccusscaffold_60167450 Alkaloid NMT medium borderline NMT__00023__sp_O82210_ANM12_ARATH
Ccusscaffold_60169170 Alkaloid NMT medium borderline NMT__00070__sp_W5U2K2_NMT_CATRO
Ccusscaffold_60169990 Alkaloid NMT low borderline NMT__00020__sp_O23372_ATXR3_ARATH
Ccusscaffold_60179170 Alkaloid NMT low borderline NMT__00024__sp_P0CB22_ATX2_ARATH
Ccusscaffold_60183720 Alkaloid NMT medium borderline NMT__00038__sp_Q84PP7_MXMT2_COFAR
Ccusscaffold_60190910 Alkaloid NMT low borderline NMT__00056__sp_Q9FNE9_ATXR6_ARATH
Ccusscaffold_60192690 Alkaloid NMT medium pass NMT__00039__sp_Q84W92_ANM13_ARATH
Ccusscaffold_60193600 Alkaloid NMT medium pass NMT__00032__sp_Q5PP37_ATXR2_ARATH
Ccusscaffold_70203280 Alkaloid NMT medium pass NMT__00060__sp_Q9MAT5_ANM10_ARATH
Ccusscaffold_70205230 Alkaloid NMT medium borderline NMT__00011__sp_A9X7L0_ANMT_RUTGR
Ccusscaffold_70205270 Alkaloid NMT medium borderline NMT__00011__sp_A9X7L0_ANMT_RUTGR
Ccusscaffold_70206920 Alkaloid NMT low borderline NMT__00049__sp_Q93YF5_SUVH1_TOBAC
Ccusscaffold_80216460 Alkaloid NMT low borderline NMT__00017__sp_F4K1J4_ATXR7_ARATH
Ccusscaffold_80218530 Alkaloid NMT medium pass NMT__00056__sp_Q9FNE9_ATXR6_ARATH
Ccusscaffold_80218550 Alkaloid NMT medium pass NMT__00056__sp_Q9FNE9_ATXR6_ARATH
Ccusscaffold_90237410 Alkaloid NMT medium pass NMT__00035__sp_Q6K431_TRX1_ORYSJ
Ccusscaffold_90237950 Alkaloid NMT low borderline NMT__00056__sp_Q9FNE9_ATXR6_ARATH
Ccusscaffold_90238010 Alkaloid NMT medium pass NMT__00019__sp_O22781_SUVH2_ARATH