PlantSME Plant secondary metabolism enzyme database

Calliergonella cuspidata (calliergonella_cuspidata)

Imported from atlas release summary for Calliergonella cuspidata.

703
Candidate Genes
102
Families
6
Pathways
Phylogenetic Position
The current species is positioned within the lineage framework used by this site. Its taxon group is highlighted below.
Algae
Site group 29
Bryophytes
Current group 125
Lycophytes/Ferns
Site group 4
Gymnosperms
Site group 6
Basal angiosperms
Site group 13
Monocots
Site group 117
Eudicots
Site group 495
Species Metadata
Taxon group
Bryophytes
Genome status
Genome-level resource available
Site Placement
  • This page summarizes pathway coverage, family distributions, and the gene list for the species within the current public dataset.
  • If you want to start from the public overview first, open the homepage and then return here for species-level drill-down.
  • Family statistics correspond to enzyme families, while pathway statistics correspond to the real category-level pathways.
Pathway Coverage
Phenylpropanoid pathway 25.04% Terpenoid pathway 23.76% Alkaloid pathway 19.49% Flavonoid pathway 15.22% Rosmarinic acid pathway 10.81% Steroid pathway 5.69%
Family Distribution
C4H 7.49% C3'H/CYP98A 6.12% POD 5.08% BAHD 4.87% 4CL 4.76% CYP76 4.65% PAL 4.59% NMT 3.23%
Other Families 59.21%
More Families (94)
IFS 52 2.84% F3'H/CYP75B 51 2.79% PYKS 41 2.24% DWF4/CYP90B1 41 2.24% BR6OX2/CYP85A2 40 2.19% STR 37 2.02% T3O 37 2.02% IFR 36 1.97% F3H 35 1.91% GS 33 1.8% UGT 30 1.64% UFGT 29 1.59% CHS 29 1.59% 7DLGT 27 1.48% IO 26 1.42% CODM/T6ODM 22 1.2% CAD 22 1.2% SMT1/SMT2/SMT3 20 1.09% CYP90D1 19 1.04% 7DLH 18 0.98% TRI/TRII 18 0.98% SLS 18 0.98% CAS 17 0.93% T16H 16 0.87% G8O/G8H 15 0.82% H6H 15 0.82% COMT 15 0.82% CYP71 15 0.82% FNS 13 0.71% LAMT 12 0.66% CSE 12 0.66% NCS 11 0.6% F3'5'H/CYP75A 11 0.6% F5H/CYP84A 10 0.55% RAS 10 0.55% CPD/CYP90A1 10 0.55% 8HGO 9 0.49% CYP80B1 9 0.49% ANR 9 0.49% HCT 9 0.49% LAC 8 0.44% 16OMT 7 0.38% CNMT 7 0.38% SGD 7 0.38% COR 7 0.38% GGPPS 7 0.38% MPO 6 0.33% CCR 6 0.33% SQS/FDFT1 6 0.33% PMT 5 0.27% CYP719 5 0.27% TDC 5 0.27% BBE 5 0.27% CPR 5 0.27% TAT 5 0.27% AACT 5 0.27% MVD 5 0.27% DWF5 4 0.22% CYP51G1 4 0.22% BR6OX1/CYP85A1 4 0.22% HYD1 4 0.22% ROT3/CYP90C1 4 0.22% HDS/IspG 4 0.22% 6OMT_4OMT_SOMT 3 0.16% ADC 3 0.16% GES 3 0.16% FLS 3 0.16% CHI 3 0.16% SQE 3 0.16% DET2 3 0.16% MVK 3 0.16% FPPS 3 0.16% TPS 3 0.16% TYDC_DDC 2 0.11% DFR 2 0.11% SMO1/SMO2 2 0.11% DWF1 2 0.11% HMGS 2 0.11% HDR/IspH 2 0.11% MDS/IspF 2 0.11% MCT/IspD 2 0.11% ISY 1 0.05% ANS/LDOX 1 0.05% CCoAOMT 1 0.05% HPPR 1 0.05% CPI1 1 0.05% DWF7 1 0.05% FK 1 0.05% DXR 1 0.05% IDI 1 0.05% CMK/IspE 1 0.05% PMK 1 0.05% DXS 1 0.05% HMGR 1 0.05%
Species Pathway Results
The links below show identification results for this species within each pathway, instead of opening the global pathway overview.
Pathway Candidate Genes Families Top family Results
Phenylpropanoid pathway 176 11 POD (86) View species results
Terpenoid pathway 167 19 BAHD (65) View species results
Alkaloid pathway 137 18 PYKS (29) View species results
Flavonoid pathway 107 12 CHS (29) View species results
Rosmarinic acid pathway 76 7 PAL (26) View species results
Steroid pathway 40 12 CAS (14) View species results
Broad Catalytic Groups
P450/oxygenase and BAHD/acyltransferase are counted separately as broad catalytic groups and are not mixed into the canonical enzyme-family count.
Catalytic group Families Candidate genes Included families
P450/oxygenase 23 739 7DLH, BR6OX1/CYP85A1, BR6OX2/CYP85A2, C3'H/CYP98A, C4H, CPD/CYP90A1, CYP51G1, CYP71, CYP719, CYP76, CYP80B1, CYP90D1, DWF4/CYP90B1, F3'5'H/CYP75A, F3'H/CYP75B, F5H/CYP84A, G8O/G8H, IFS, IO, ROT3/CYP90C1, SLS, T16H, T3O
BAHD/acyltransferase 3 108 BAHD, HCT, RAS
Identification Result List
Search the public identification results for this species; click pathway or family legends above to narrow within this species.
Current family filter: SMT1/SMT2/SMT3
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Gene Pathway Family Confidence Status Best Target
Ccusscaffold_100034460 Steroid SMT1/SMT2/SMT3 low borderline SMT1_SMT2_SMT3__00005__sp_Q8RUW5_SCP8_ARATH
Ccusscaffold_120061810 Steroid SMT1/SMT2/SMT3 medium pass SMT1_SMT2_SMT3__00002__sp_H2E7T9_SMTL2_BOTBR
Ccusscaffold_130065760 Steroid SMT1/SMT2/SMT3 medium pass SMT1_SMT2_SMT3__00006__sp_Q9LM02_SMT1_ARATH
Ccusscaffold_20082520 Steroid SMT1/SMT2/SMT3 medium pass SMT1_SMT2_SMT3__00006__sp_Q9LM02_SMT1_ARATH
Ccusscaffold_20082640 Steroid SMT1/SMT2/SMT3 medium pass SMT1_SMT2_SMT3__00006__sp_Q9LM02_SMT1_ARATH
Ccusscaffold_40099650 Steroid SMT1/SMT2/SMT3 medium pass SMT1_SMT2_SMT3__00005__sp_Q8RUW5_SCP8_ARATH
Ccusscaffold_40110000 Steroid SMT1/SMT2/SMT3 low borderline SMT1_SMT2_SMT3__00001__sp_H2E7T8_SMTL1_BOTBR
Ccusscaffold_50128500 Steroid SMT1/SMT2/SMT3 low borderline SMT1_SMT2_SMT3__00005__sp_Q8RUW5_SCP8_ARATH
Ccusscaffold_50148380 Steroid SMT1/SMT2/SMT3 low borderline SMT1_SMT2_SMT3__00006__sp_Q9LM02_SMT1_ARATH
Ccusscaffold_60167760 Steroid SMT1/SMT2/SMT3 low borderline SMT1_SMT2_SMT3__00005__sp_Q8RUW5_SCP8_ARATH
Ccusscaffold_60169170 Steroid SMT1/SMT2/SMT3 low borderline SMT1_SMT2_SMT3__00006__sp_Q9LM02_SMT1_ARATH
Ccusscaffold_60193500 Steroid SMT1/SMT2/SMT3 low borderline SMT1_SMT2_SMT3__00005__sp_Q8RUW5_SCP8_ARATH
Ccusscaffold_70203300 Steroid SMT1/SMT2/SMT3 low borderline SMT1_SMT2_SMT3__00005__sp_Q8RUW5_SCP8_ARATH
Ccusscaffold_70205100 Steroid SMT1/SMT2/SMT3 low borderline SMT1_SMT2_SMT3__00005__sp_Q8RUW5_SCP8_ARATH
Ccusscaffold_70214730 Steroid SMT1/SMT2/SMT3 medium pass SMT1_SMT2_SMT3__00005__sp_Q8RUW5_SCP8_ARATH
Ccusscaffold_80230640 Steroid SMT1/SMT2/SMT3 medium pass SMT1_SMT2_SMT3__00004__sp_Q4VNK0_SMTA_BRAOT
Ccusscaffold_80232630 Steroid SMT1/SMT2/SMT3 low borderline SMT1_SMT2_SMT3__00005__sp_Q8RUW5_SCP8_ARATH
Ccusscaffold_90243770 Steroid SMT1/SMT2/SMT3 low borderline SMT1_SMT2_SMT3__00005__sp_Q8RUW5_SCP8_ARATH
Ccusscaffold_90244490 Steroid SMT1/SMT2/SMT3 low borderline SMT1_SMT2_SMT3__00005__sp_Q8RUW5_SCP8_ARATH
Ccusscaffold_90269990 Steroid SMT1/SMT2/SMT3 low borderline SMT1_SMT2_SMT3__00005__sp_Q8RUW5_SCP8_ARATH