Calliergonella cuspidata (calliergonella_cuspidata)
Imported from atlas release summary for Calliergonella cuspidata.
703
Candidate Genes
102
Families
6
Pathways
Phylogenetic Position
The current species is positioned within the lineage framework used by this site. Its taxon group is highlighted below.
Species Metadata
Taxon group
Bryophytes
Genome status
Genome-level resource available
Site Placement
- This page summarizes pathway coverage, family distributions, and the gene list for the species within the current public dataset.
- If you want to start from the public overview first, open the homepage and then return here for species-level drill-down.
- Family statistics correspond to enzyme families, while pathway statistics correspond to the real category-level pathways.
Pathway Coverage
6
Pathways
Family Distribution
703
Candidate Genes
C4H
7.49%
C3'H/CYP98A
6.12%
POD
5.08%
BAHD
4.87%
4CL
4.76%
CYP76
4.65%
PAL
4.59%
NMT
3.23%
Other Families
59.21%
More Families (94)
IFS
52
2.84%
F3'H/CYP75B
51
2.79%
PYKS
41
2.24%
DWF4/CYP90B1
41
2.24%
BR6OX2/CYP85A2
40
2.19%
STR
37
2.02%
T3O
37
2.02%
IFR
36
1.97%
F3H
35
1.91%
GS
33
1.8%
UGT
30
1.64%
UFGT
29
1.59%
CHS
29
1.59%
7DLGT
27
1.48%
IO
26
1.42%
CODM/T6ODM
22
1.2%
CAD
22
1.2%
SMT1/SMT2/SMT3
20
1.09%
CYP90D1
19
1.04%
7DLH
18
0.98%
TRI/TRII
18
0.98%
SLS
18
0.98%
CAS
17
0.93%
T16H
16
0.87%
G8O/G8H
15
0.82%
H6H
15
0.82%
COMT
15
0.82%
CYP71
15
0.82%
FNS
13
0.71%
LAMT
12
0.66%
CSE
12
0.66%
NCS
11
0.6%
F3'5'H/CYP75A
11
0.6%
F5H/CYP84A
10
0.55%
RAS
10
0.55%
CPD/CYP90A1
10
0.55%
8HGO
9
0.49%
CYP80B1
9
0.49%
ANR
9
0.49%
HCT
9
0.49%
LAC
8
0.44%
16OMT
7
0.38%
CNMT
7
0.38%
SGD
7
0.38%
COR
7
0.38%
GGPPS
7
0.38%
MPO
6
0.33%
CCR
6
0.33%
SQS/FDFT1
6
0.33%
PMT
5
0.27%
CYP719
5
0.27%
TDC
5
0.27%
BBE
5
0.27%
CPR
5
0.27%
TAT
5
0.27%
AACT
5
0.27%
MVD
5
0.27%
DWF5
4
0.22%
CYP51G1
4
0.22%
BR6OX1/CYP85A1
4
0.22%
HYD1
4
0.22%
ROT3/CYP90C1
4
0.22%
HDS/IspG
4
0.22%
6OMT_4OMT_SOMT
3
0.16%
ADC
3
0.16%
GES
3
0.16%
FLS
3
0.16%
CHI
3
0.16%
SQE
3
0.16%
DET2
3
0.16%
MVK
3
0.16%
FPPS
3
0.16%
TPS
3
0.16%
TYDC_DDC
2
0.11%
DFR
2
0.11%
SMO1/SMO2
2
0.11%
DWF1
2
0.11%
HMGS
2
0.11%
HDR/IspH
2
0.11%
MDS/IspF
2
0.11%
MCT/IspD
2
0.11%
ISY
1
0.05%
ANS/LDOX
1
0.05%
CCoAOMT
1
0.05%
HPPR
1
0.05%
CPI1
1
0.05%
DWF7
1
0.05%
FK
1
0.05%
DXR
1
0.05%
IDI
1
0.05%
CMK/IspE
1
0.05%
PMK
1
0.05%
DXS
1
0.05%
HMGR
1
0.05%
Species Pathway Results
The links below show identification results for this species within each pathway, instead of opening the global pathway overview.
| Pathway | Candidate Genes | Families | Top family | Results |
|---|---|---|---|---|
| Phenylpropanoid pathway | 176 | 11 | POD (86) | View species results |
| Terpenoid pathway | 167 | 19 | BAHD (65) | View species results |
| Alkaloid pathway | 137 | 18 | PYKS (29) | View species results |
| Flavonoid pathway | 107 | 12 | CHS (29) | View species results |
| Rosmarinic acid pathway | 76 | 7 | PAL (26) | View species results |
| Steroid pathway | 40 | 12 | CAS (14) | View species results |
Broad Catalytic Groups
P450/oxygenase and BAHD/acyltransferase are counted separately as broad catalytic groups and are not mixed into the canonical enzyme-family count.
| Catalytic group | Families | Candidate genes | Included families |
|---|---|---|---|
| P450/oxygenase | 23 | 739 | 7DLH, BR6OX1/CYP85A1, BR6OX2/CYP85A2, C3'H/CYP98A, C4H, CPD/CYP90A1, CYP51G1, CYP71, CYP719, CYP76, CYP80B1, CYP90D1, DWF4/CYP90B1, F3'5'H/CYP75A, F3'H/CYP75B, F5H/CYP84A, G8O/G8H, IFS, IO, ROT3/CYP90C1, SLS, T16H, T3O |
| BAHD/acyltransferase | 3 | 108 | BAHD, HCT, RAS |
Identification Result List
Search the public identification results for this species; click pathway or family legends above to narrow within this species.
Current family filter: TRI/TRII
| Gene | Pathway | Family | Confidence | Status | Best Target |
|---|---|---|---|---|---|
| Ccusscaffold_100024110 | Alkaloid | TRI/TRII | medium | pass | TRI_TRII__00003__sp_H9BFQ1_TPRL2_ERYCB |
| Ccusscaffold_10005490 | Alkaloid | TRI/TRII | medium | pass | TRI_TRII__00002__sp_H9BFQ0_TPRL1_ERYCB |
| Ccusscaffold_10005510 | Alkaloid | TRI/TRII | low | borderline | TRI_TRII__00002__sp_H9BFQ0_TPRL1_ERYCB |
| Ccusscaffold_50117470 | Alkaloid | TRI/TRII | medium | pass | TRI_TRII__00003__sp_H9BFQ1_TPRL2_ERYCB |
| Ccusscaffold_60162220 | Alkaloid | TRI/TRII | medium | pass | TRI_TRII__00005__sp_P50162_TRN1_DATST |
| Ccusscaffold_60164650 | Alkaloid | TRI/TRII | medium | pass | TRI_TRII__00007__sp_Q9ZW16_TRNHA_ARATH |
| Ccusscaffold_60192730 | Alkaloid | TRI/TRII | low | borderline | TRI_TRII__00005__sp_P50162_TRN1_DATST |
| Ccusscaffold_60193700 | Alkaloid | TRI/TRII | low | borderline | TRI_TRII__00005__sp_P50162_TRN1_DATST |
| Ccusscaffold_60193710 | Alkaloid | TRI/TRII | low | borderline | TRI_TRII__00005__sp_P50162_TRN1_DATST |
| Ccusscaffold_60197400 | Alkaloid | TRI/TRII | medium | pass | TRI_TRII__00007__sp_Q9ZW16_TRNHA_ARATH |
| Ccusscaffold_60197440 | Alkaloid | TRI/TRII | medium | pass | TRI_TRII__00004__sp_H9BFQ2_TPRL3_ERYCB |
| Ccusscaffold_70200670 | Alkaloid | TRI/TRII | medium | pass | TRI_TRII__00001__sp_A7DY56_TRN1_COCOF |
| Ccusscaffold_70202060 | Alkaloid | TRI/TRII | low | borderline | TRI_TRII__00001__sp_A7DY56_TRN1_COCOF |
| Ccusscaffold_70214100 | Alkaloid | TRI/TRII | low | borderline | TRI_TRII__00005__sp_P50162_TRN1_DATST |
| Ccusscaffold_80232230 | Alkaloid | TRI/TRII | medium | pass | TRI_TRII__00002__sp_H9BFQ0_TPRL1_ERYCB |
| Ccusscaffold_80233620 | Alkaloid | TRI/TRII | low | borderline | TRI_TRII__00005__sp_P50162_TRN1_DATST |
| Ccusscaffold_80233630 | Alkaloid | TRI/TRII | low | borderline | TRI_TRII__00004__sp_H9BFQ2_TPRL3_ERYCB |
| Ccusscaffold_90242560 | Alkaloid | TRI/TRII | medium | pass | TRI_TRII__00009__sp_Q9ZW19_TRNHC_ARATH |