PlantSME Plant secondary metabolism enzyme database

Cardamine resedifolia (cardamine_resedifolia)

Imported from atlas release summary for Cardamine resedifolia.

1028
Candidate Genes
104
Families
6
Pathways
Phylogenetic Position
The current species is positioned within the lineage framework used by this site. Its taxon group is highlighted below.
Algae
Site group 29
Bryophytes
Site group 125
Lycophytes/Ferns
Site group 4
Gymnosperms
Site group 6
Basal angiosperms
Site group 13
Monocots
Site group 117
Eudicots
Current group 495
Species Metadata
Taxon group
Eudicots
Genome status
Genome-level resource available
Site Placement
  • This page summarizes pathway coverage, family distributions, and the gene list for the species within the current public dataset.
  • If you want to start from the public overview first, open the homepage and then return here for species-level drill-down.
  • Family statistics correspond to enzyme families, while pathway statistics correspond to the real category-level pathways.
Pathway Coverage
Terpenoid pathway 30.06% Phenylpropanoid pathway 22.37% Alkaloid pathway 21.5% Flavonoid pathway 12.16% Rosmarinic acid pathway 7.49% Steroid pathway 6.42%
Family Distribution
BAHD 6.47% C4H 6.07% C3'H/CYP98A 5.78% POD 4.29% CYP76 4.0% 4CL 3.82% IFS 3.56% UGT 3.34%
Other Families 62.68%
More Families (96)
7DLGT 86 3.12% UFGT 85 3.09% T3O 78 2.83% NMT 78 2.83% F3H 73 2.65% DWF4/CYP90B1 72 2.62% BR6OX2/CYP85A2 60 2.18% STR 58 2.11% F3'H/CYP75B 51 1.85% CODM/T6ODM 46 1.67% CYP71 44 1.6% CSE 43 1.56% SMT1/SMT2/SMT3 42 1.53% SGD 35 1.27% H6H 35 1.27% CAD 30 1.09% TRI/TRII 29 1.05% G8O/G8H 28 1.02% T16H 28 1.02% CAS 28 1.02% PYKS 27 0.98% IFR 27 0.98% F5H/CYP84A 27 0.98% FNS 25 0.91% LAC 25 0.91% ANR 20 0.73% TPS 20 0.73% GES 19 0.69% SLS 19 0.69% RAS 19 0.69% TAT 19 0.69% IO 17 0.62% F3'5'H/CYP75A 17 0.62% CCR 17 0.62% COMT 17 0.62% GS 15 0.55% LAMT 15 0.55% BBE 14 0.51% HCT 14 0.51% CPD/CYP90A1 14 0.51% GGPPS 14 0.51% CNMT 13 0.47% CYP90D1 13 0.47% 7DLH 12 0.44% 16OMT 12 0.44% ANS/LDOX 12 0.44% BR6OX1/CYP85A1 12 0.44% 8HGO 11 0.4% NCS 11 0.4% CYP51G1 11 0.4% MPO 10 0.36% SQE 10 0.36% PMT 9 0.33% PAL 9 0.33% CCoAOMT 8 0.29% DFR 7 0.25% CPR 7 0.25% FPPS 7 0.25% CYP719 6 0.22% COR 6 0.22% AACT 6 0.22% MVD 6 0.22% XMT_MXMT_DXMT 5 0.18% CYP80B1 5 0.18% DET2 5 0.18% ROT3/CYP90C1 5 0.18% SMO1/SMO2 5 0.18% DXS 5 0.18% PMK 5 0.18% MCT/IspD 5 0.18% TDC 4 0.15% CHS 4 0.15% CHI 4 0.15% SQS/FDFT1 4 0.15% MVK 4 0.15% CMK/IspE 4 0.15% CYP80F1 3 0.11% TYDC_DDC 3 0.11% ADC 2 0.07% ISY 2 0.07% HPPR 2 0.07% DWF7 2 0.07% DWF5 2 0.07% DWF1 2 0.07% MDS/IspF 2 0.07% HMGR 2 0.07% IDI 2 0.07% 6OMT_4OMT_SOMT 1 0.04% FLS 1 0.04% FK 1 0.04% CPI1 1 0.04% HYD1 1 0.04% HDS/IspG 1 0.04% HDR/IspH 1 0.04% HMGS 1 0.04% DXR 1 0.04%
Species Pathway Results
The links below show identification results for this species within each pathway, instead of opening the global pathway overview.
Pathway Candidate Genes Families Top family Results
Terpenoid pathway 309 19 BAHD (138) View species results
Phenylpropanoid pathway 230 11 POD (110) View species results
Alkaloid pathway 221 19 NMT (43) View species results
Flavonoid pathway 125 9 UFGT (80) View species results
Rosmarinic acid pathway 77 7 C4H (32) View species results
Steroid pathway 66 11 CAS (22) View species results
Broad Catalytic Groups
P450/oxygenase and BAHD/acyltransferase are counted separately as broad catalytic groups and are not mixed into the canonical enzyme-family count.
Catalytic group Families Candidate genes Included families
P450/oxygenase 24 1056 7DLH, BR6OX1/CYP85A1, BR6OX2/CYP85A2, C3'H/CYP98A, C4H, CPD/CYP90A1, CYP51G1, CYP71, CYP719, CYP76, CYP80B1, CYP80F1, CYP90D1, DWF4/CYP90B1, F3'5'H/CYP75A, F3'H/CYP75B, F5H/CYP84A, G8O/G8H, IFS, IO, ROT3/CYP90C1, SLS, T16H, T3O
BAHD/acyltransferase 3 211 BAHD, HCT, RAS
Identification Result List
Search the public identification results for this species; click pathway or family legends above to narrow within this species.
Current family filter: BBE
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Gene Pathway Family Confidence Status Best Target
Cresscaffold123_size3602640022800.1 Alkaloid BBE medium borderline BBE__00007__sp_Q9FZC4_FOX1_ARATH
Cresscaffold136_size2905470034920.1 Alkaloid BBE medium borderline BBE__00004__sp_O64743_BBE15_ARATH
Cresscaffold1597_size166740050030.1 Alkaloid BBE low borderline BBE__00007__sp_Q9FZC4_FOX1_ARATH
Cresscaffold15_size4365780050970.1 Alkaloid BBE low borderline BBE__00007__sp_Q9FZC4_FOX1_ARATH
Cresscaffold1732_size229620060080.1 Alkaloid BBE medium borderline BBE__00007__sp_Q9FZC4_FOX1_ARATH
Cresscaffold1965_size372080073480.1 Alkaloid BBE low borderline BBE__00004__sp_O64743_BBE15_ARATH
Cresscaffold2038_size340450077640.1 Alkaloid BBE medium borderline BBE__00004__sp_O64743_BBE15_ARATH
Cresscaffold521_size694240173100.1 Alkaloid BBE low borderline BBE__00007__sp_Q9FZC4_FOX1_ARATH
Cresscaffold704_size511750203610.1 Alkaloid BBE low borderline BBE__00006__sp_Q9FI21_BBE28_ARATH
Cresscaffold704_size511750203620.1 Alkaloid BBE medium borderline BBE__00004__sp_O64743_BBE15_ARATH
Cresscaffold704_size511750203640.1 Alkaloid BBE medium borderline BBE__00005__sp_Q93ZA3_BBE13_ARATH
Cresscaffold839_size624460223290.1 Alkaloid BBE low borderline BBE__00006__sp_Q9FI21_BBE28_ARATH
Cresscaffold839_size624460223320.1 Alkaloid BBE medium borderline BBE__00004__sp_O64743_BBE15_ARATH
Cresscaffold894_size352050230820.1 Alkaloid BBE medium borderline BBE__00005__sp_Q93ZA3_BBE13_ARATH