Cardamine resedifolia (cardamine_resedifolia)
Imported from atlas release summary for Cardamine resedifolia.
1028
Candidate Genes
104
Families
6
Pathways
Phylogenetic Position
The current species is positioned within the lineage framework used by this site. Its taxon group is highlighted below.
Species Metadata
Taxon group
Eudicots
Genome status
Genome-level resource available
Site Placement
- This page summarizes pathway coverage, family distributions, and the gene list for the species within the current public dataset.
- If you want to start from the public overview first, open the homepage and then return here for species-level drill-down.
- Family statistics correspond to enzyme families, while pathway statistics correspond to the real category-level pathways.
Pathway Coverage
6
Pathways
Family Distribution
1028
Candidate Genes
BAHD
6.47%
C4H
6.07%
C3'H/CYP98A
5.78%
POD
4.29%
CYP76
4.0%
4CL
3.82%
IFS
3.56%
UGT
3.34%
Other Families
62.68%
More Families (96)
7DLGT
86
3.12%
UFGT
85
3.09%
T3O
78
2.83%
NMT
78
2.83%
F3H
73
2.65%
DWF4/CYP90B1
72
2.62%
BR6OX2/CYP85A2
60
2.18%
STR
58
2.11%
F3'H/CYP75B
51
1.85%
CODM/T6ODM
46
1.67%
CYP71
44
1.6%
CSE
43
1.56%
SMT1/SMT2/SMT3
42
1.53%
SGD
35
1.27%
H6H
35
1.27%
CAD
30
1.09%
TRI/TRII
29
1.05%
G8O/G8H
28
1.02%
T16H
28
1.02%
CAS
28
1.02%
PYKS
27
0.98%
IFR
27
0.98%
F5H/CYP84A
27
0.98%
FNS
25
0.91%
LAC
25
0.91%
ANR
20
0.73%
TPS
20
0.73%
GES
19
0.69%
SLS
19
0.69%
RAS
19
0.69%
TAT
19
0.69%
IO
17
0.62%
F3'5'H/CYP75A
17
0.62%
CCR
17
0.62%
COMT
17
0.62%
GS
15
0.55%
LAMT
15
0.55%
BBE
14
0.51%
HCT
14
0.51%
CPD/CYP90A1
14
0.51%
GGPPS
14
0.51%
CNMT
13
0.47%
CYP90D1
13
0.47%
7DLH
12
0.44%
16OMT
12
0.44%
ANS/LDOX
12
0.44%
BR6OX1/CYP85A1
12
0.44%
8HGO
11
0.4%
NCS
11
0.4%
CYP51G1
11
0.4%
MPO
10
0.36%
SQE
10
0.36%
PMT
9
0.33%
PAL
9
0.33%
CCoAOMT
8
0.29%
DFR
7
0.25%
CPR
7
0.25%
FPPS
7
0.25%
CYP719
6
0.22%
COR
6
0.22%
AACT
6
0.22%
MVD
6
0.22%
XMT_MXMT_DXMT
5
0.18%
CYP80B1
5
0.18%
DET2
5
0.18%
ROT3/CYP90C1
5
0.18%
SMO1/SMO2
5
0.18%
DXS
5
0.18%
PMK
5
0.18%
MCT/IspD
5
0.18%
TDC
4
0.15%
CHS
4
0.15%
CHI
4
0.15%
SQS/FDFT1
4
0.15%
MVK
4
0.15%
CMK/IspE
4
0.15%
CYP80F1
3
0.11%
TYDC_DDC
3
0.11%
ADC
2
0.07%
ISY
2
0.07%
HPPR
2
0.07%
DWF7
2
0.07%
DWF5
2
0.07%
DWF1
2
0.07%
MDS/IspF
2
0.07%
HMGR
2
0.07%
IDI
2
0.07%
6OMT_4OMT_SOMT
1
0.04%
FLS
1
0.04%
FK
1
0.04%
CPI1
1
0.04%
HYD1
1
0.04%
HDS/IspG
1
0.04%
HDR/IspH
1
0.04%
HMGS
1
0.04%
DXR
1
0.04%
Species Pathway Results
The links below show identification results for this species within each pathway, instead of opening the global pathway overview.
| Pathway | Candidate Genes | Families | Top family | Results |
|---|---|---|---|---|
| Terpenoid pathway | 309 | 19 | BAHD (138) | View species results |
| Phenylpropanoid pathway | 230 | 11 | POD (110) | View species results |
| Alkaloid pathway | 221 | 19 | NMT (43) | View species results |
| Flavonoid pathway | 125 | 9 | UFGT (80) | View species results |
| Rosmarinic acid pathway | 77 | 7 | C4H (32) | View species results |
| Steroid pathway | 66 | 11 | CAS (22) | View species results |
Broad Catalytic Groups
P450/oxygenase and BAHD/acyltransferase are counted separately as broad catalytic groups and are not mixed into the canonical enzyme-family count.
| Catalytic group | Families | Candidate genes | Included families |
|---|---|---|---|
| P450/oxygenase | 24 | 1056 | 7DLH, BR6OX1/CYP85A1, BR6OX2/CYP85A2, C3'H/CYP98A, C4H, CPD/CYP90A1, CYP51G1, CYP71, CYP719, CYP76, CYP80B1, CYP80F1, CYP90D1, DWF4/CYP90B1, F3'5'H/CYP75A, F3'H/CYP75B, F5H/CYP84A, G8O/G8H, IFS, IO, ROT3/CYP90C1, SLS, T16H, T3O |
| BAHD/acyltransferase | 3 | 211 | BAHD, HCT, RAS |
Identification Result List
Search the public identification results for this species; click pathway or family legends above to narrow within this species.
Current family filter: GS
| Gene | Pathway | Family | Confidence | Status |
|---|---|---|---|---|
| Cresscaffold107_size1395830007160.1 | Alkaloid | GS | low | borderline |
| Cresscaffold121_size2507180021550.1 | Alkaloid | GS | low | borderline |
| Cresscaffold137_size1496410035530.1 | Alkaloid | GS | low | borderline |
| Cresscaffold16_size2996070058120.1 | Alkaloid | GS | high | pass |
| Cresscaffold188_size2390890069100.1 | Alkaloid | GS | medium | pass |
| Cresscaffold223_size1621580086410.1 | Alkaloid | GS | high | pass |
| Cresscaffold318_size1217230123230.1 | Alkaloid | GS | low | borderline |
| Cresscaffold319_size1981890123520.1 | Alkaloid | GS | medium | pass |
| Cresscaffold4285_size54220152130.1 | Alkaloid | GS | high | pass |
| Cresscaffold54_size1291040178460.1 | Alkaloid | GS | high | pass |
| Cresscaffold55_size1750970180480.1 | Alkaloid | GS | low | borderline |
| Cresscaffold630_size508130192700.1 | Alkaloid | GS | low | borderline |
| Cresscaffold6_size2820140202970.1 | Alkaloid | GS | high | pass |
| Cresscaffold82_size2646210222490.1 | Alkaloid | GS | medium | pass |
| Cresscaffold95_size2375940237740.1 | Alkaloid | GS | low | borderline |