PlantSME Plant secondary metabolism enzyme database

Cardamine resedifolia (cardamine_resedifolia)

Imported from atlas release summary for Cardamine resedifolia.

1028
Candidate Genes
104
Families
6
Pathways
Phylogenetic Position
The current species is positioned within the lineage framework used by this site. Its taxon group is highlighted below.
Algae
Site group 29
Bryophytes
Site group 125
Lycophytes/Ferns
Site group 4
Gymnosperms
Site group 6
Basal angiosperms
Site group 13
Monocots
Site group 117
Eudicots
Current group 495
Species Metadata
Taxon group
Eudicots
Genome status
Genome-level resource available
Site Placement
  • This page summarizes pathway coverage, family distributions, and the gene list for the species within the current public dataset.
  • If you want to start from the public overview first, open the homepage and then return here for species-level drill-down.
  • Family statistics correspond to enzyme families, while pathway statistics correspond to the real category-level pathways.
Pathway Coverage
Terpenoid pathway 30.06% Phenylpropanoid pathway 22.37% Alkaloid pathway 21.5% Flavonoid pathway 12.16% Rosmarinic acid pathway 7.49% Steroid pathway 6.42%
Family Distribution
BAHD 6.47% C4H 6.07% C3'H/CYP98A 5.78% POD 4.29% CYP76 4.0% 4CL 3.82% IFS 3.56% UGT 3.34%
Other Families 62.68%
More Families (96)
7DLGT 86 3.12% UFGT 85 3.09% T3O 78 2.83% NMT 78 2.83% F3H 73 2.65% DWF4/CYP90B1 72 2.62% BR6OX2/CYP85A2 60 2.18% STR 58 2.11% F3'H/CYP75B 51 1.85% CODM/T6ODM 46 1.67% CYP71 44 1.6% CSE 43 1.56% SMT1/SMT2/SMT3 42 1.53% SGD 35 1.27% H6H 35 1.27% CAD 30 1.09% TRI/TRII 29 1.05% G8O/G8H 28 1.02% T16H 28 1.02% CAS 28 1.02% PYKS 27 0.98% IFR 27 0.98% F5H/CYP84A 27 0.98% FNS 25 0.91% LAC 25 0.91% ANR 20 0.73% TPS 20 0.73% GES 19 0.69% SLS 19 0.69% RAS 19 0.69% TAT 19 0.69% IO 17 0.62% F3'5'H/CYP75A 17 0.62% CCR 17 0.62% COMT 17 0.62% GS 15 0.55% LAMT 15 0.55% BBE 14 0.51% HCT 14 0.51% CPD/CYP90A1 14 0.51% GGPPS 14 0.51% CNMT 13 0.47% CYP90D1 13 0.47% 7DLH 12 0.44% 16OMT 12 0.44% ANS/LDOX 12 0.44% BR6OX1/CYP85A1 12 0.44% 8HGO 11 0.4% NCS 11 0.4% CYP51G1 11 0.4% MPO 10 0.36% SQE 10 0.36% PMT 9 0.33% PAL 9 0.33% CCoAOMT 8 0.29% DFR 7 0.25% CPR 7 0.25% FPPS 7 0.25% CYP719 6 0.22% COR 6 0.22% AACT 6 0.22% MVD 6 0.22% XMT_MXMT_DXMT 5 0.18% CYP80B1 5 0.18% DET2 5 0.18% ROT3/CYP90C1 5 0.18% SMO1/SMO2 5 0.18% DXS 5 0.18% PMK 5 0.18% MCT/IspD 5 0.18% TDC 4 0.15% CHS 4 0.15% CHI 4 0.15% SQS/FDFT1 4 0.15% MVK 4 0.15% CMK/IspE 4 0.15% CYP80F1 3 0.11% TYDC_DDC 3 0.11% ADC 2 0.07% ISY 2 0.07% HPPR 2 0.07% DWF7 2 0.07% DWF5 2 0.07% DWF1 2 0.07% MDS/IspF 2 0.07% HMGR 2 0.07% IDI 2 0.07% 6OMT_4OMT_SOMT 1 0.04% FLS 1 0.04% FK 1 0.04% CPI1 1 0.04% HYD1 1 0.04% HDS/IspG 1 0.04% HDR/IspH 1 0.04% HMGS 1 0.04% DXR 1 0.04%
Species Pathway Results
The links below show identification results for this species within each pathway, instead of opening the global pathway overview.
Pathway Candidate Genes Families Top family Results
Terpenoid pathway 309 19 BAHD (138) View species results
Phenylpropanoid pathway 230 11 POD (110) View species results
Alkaloid pathway 221 19 NMT (43) View species results
Flavonoid pathway 125 9 UFGT (80) View species results
Rosmarinic acid pathway 77 7 C4H (32) View species results
Steroid pathway 66 11 CAS (22) View species results
Broad Catalytic Groups
P450/oxygenase and BAHD/acyltransferase are counted separately as broad catalytic groups and are not mixed into the canonical enzyme-family count.
Catalytic group Families Candidate genes Included families
P450/oxygenase 24 1056 7DLH, BR6OX1/CYP85A1, BR6OX2/CYP85A2, C3'H/CYP98A, C4H, CPD/CYP90A1, CYP51G1, CYP71, CYP719, CYP76, CYP80B1, CYP80F1, CYP90D1, DWF4/CYP90B1, F3'5'H/CYP75A, F3'H/CYP75B, F5H/CYP84A, G8O/G8H, IFS, IO, ROT3/CYP90C1, SLS, T16H, T3O
BAHD/acyltransferase 3 211 BAHD, HCT, RAS
Identification Result List
Search the public identification results for this species; click pathway or family legends above to narrow within this species.
Current family filter: PAL
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Gene Pathway Family Confidence Status Best Target
Cresscaffold1848_size143880067050.1 Flavonoid PAL high pass PAL__00003__sp_P45724_PAL2_ARATH
Cresscaffold324_size1275880126550.1 Flavonoid PAL high pass PAL__00009__sp_Q9SS45_PAL4_ARATH
Cresscaffold568_size1233010181510.1 Flavonoid PAL high pass PAL__00002__sp_P35510_PAL1_ARATH
Cresscaffold1848_size143880067050.1 Phenylpropanoid PAL high pass PAL__00003__sp_P45724_PAL2_ARATH
Cresscaffold324_size1275880126550.1 Phenylpropanoid PAL high pass PAL__00009__sp_Q9SS45_PAL4_ARATH
Cresscaffold568_size1233010181510.1 Phenylpropanoid PAL high pass PAL__00002__sp_P35510_PAL1_ARATH
Cresscaffold1848_size143880067050.1 Rosmarinic Acid PAL high pass PAL__00003__sp_P45724_PAL2_ARATH
Cresscaffold324_size1275880126550.1 Rosmarinic Acid PAL high pass PAL__00009__sp_Q9SS45_PAL4_ARATH
Cresscaffold568_size1233010181510.1 Rosmarinic Acid PAL high pass PAL__00002__sp_P35510_PAL1_ARATH