Cardamine resedifolia (cardamine_resedifolia)
Imported from atlas release summary for Cardamine resedifolia.
1028
Candidate Genes
104
Families
6
Pathways
Phylogenetic Position
The current species is positioned within the lineage framework used by this site. Its taxon group is highlighted below.
Species Metadata
Taxon group
Eudicots
Genome status
Genome-level resource available
Site Placement
- This page summarizes pathway coverage, family distributions, and the gene list for the species within the current public dataset.
- If you want to start from the public overview first, open the homepage and then return here for species-level drill-down.
- Family statistics correspond to enzyme families, while pathway statistics correspond to the real category-level pathways.
Pathway Coverage
6
Pathways
Family Distribution
1028
Candidate Genes
BAHD
6.47%
C4H
6.07%
C3'H/CYP98A
5.78%
POD
4.29%
CYP76
4.0%
4CL
3.82%
IFS
3.56%
UGT
3.34%
Other Families
62.68%
More Families (96)
7DLGT
86
3.12%
UFGT
85
3.09%
T3O
78
2.83%
NMT
78
2.83%
F3H
73
2.65%
DWF4/CYP90B1
72
2.62%
BR6OX2/CYP85A2
60
2.18%
STR
58
2.11%
F3'H/CYP75B
51
1.85%
CODM/T6ODM
46
1.67%
CYP71
44
1.6%
CSE
43
1.56%
SMT1/SMT2/SMT3
42
1.53%
SGD
35
1.27%
H6H
35
1.27%
CAD
30
1.09%
TRI/TRII
29
1.05%
G8O/G8H
28
1.02%
T16H
28
1.02%
CAS
28
1.02%
PYKS
27
0.98%
IFR
27
0.98%
F5H/CYP84A
27
0.98%
FNS
25
0.91%
LAC
25
0.91%
ANR
20
0.73%
TPS
20
0.73%
GES
19
0.69%
SLS
19
0.69%
RAS
19
0.69%
TAT
19
0.69%
IO
17
0.62%
F3'5'H/CYP75A
17
0.62%
CCR
17
0.62%
COMT
17
0.62%
GS
15
0.55%
LAMT
15
0.55%
BBE
14
0.51%
HCT
14
0.51%
CPD/CYP90A1
14
0.51%
GGPPS
14
0.51%
CNMT
13
0.47%
CYP90D1
13
0.47%
7DLH
12
0.44%
16OMT
12
0.44%
ANS/LDOX
12
0.44%
BR6OX1/CYP85A1
12
0.44%
8HGO
11
0.4%
NCS
11
0.4%
CYP51G1
11
0.4%
MPO
10
0.36%
SQE
10
0.36%
PMT
9
0.33%
PAL
9
0.33%
CCoAOMT
8
0.29%
DFR
7
0.25%
CPR
7
0.25%
FPPS
7
0.25%
CYP719
6
0.22%
COR
6
0.22%
AACT
6
0.22%
MVD
6
0.22%
XMT_MXMT_DXMT
5
0.18%
CYP80B1
5
0.18%
DET2
5
0.18%
ROT3/CYP90C1
5
0.18%
SMO1/SMO2
5
0.18%
DXS
5
0.18%
PMK
5
0.18%
MCT/IspD
5
0.18%
TDC
4
0.15%
CHS
4
0.15%
CHI
4
0.15%
SQS/FDFT1
4
0.15%
MVK
4
0.15%
CMK/IspE
4
0.15%
CYP80F1
3
0.11%
TYDC_DDC
3
0.11%
ADC
2
0.07%
ISY
2
0.07%
HPPR
2
0.07%
DWF7
2
0.07%
DWF5
2
0.07%
DWF1
2
0.07%
MDS/IspF
2
0.07%
HMGR
2
0.07%
IDI
2
0.07%
6OMT_4OMT_SOMT
1
0.04%
FLS
1
0.04%
FK
1
0.04%
CPI1
1
0.04%
HYD1
1
0.04%
HDS/IspG
1
0.04%
HDR/IspH
1
0.04%
HMGS
1
0.04%
DXR
1
0.04%
Species Pathway Results
The links below show identification results for this species within each pathway, instead of opening the global pathway overview.
| Pathway | Candidate Genes | Families | Top family | Results |
|---|---|---|---|---|
| Terpenoid pathway | 309 | 19 | BAHD (138) | View species results |
| Phenylpropanoid pathway | 230 | 11 | POD (110) | View species results |
| Alkaloid pathway | 221 | 19 | NMT (43) | View species results |
| Flavonoid pathway | 125 | 9 | UFGT (80) | View species results |
| Rosmarinic acid pathway | 77 | 7 | C4H (32) | View species results |
| Steroid pathway | 66 | 11 | CAS (22) | View species results |
Broad Catalytic Groups
P450/oxygenase and BAHD/acyltransferase are counted separately as broad catalytic groups and are not mixed into the canonical enzyme-family count.
| Catalytic group | Families | Candidate genes | Included families |
|---|---|---|---|
| P450/oxygenase | 24 | 1056 | 7DLH, BR6OX1/CYP85A1, BR6OX2/CYP85A2, C3'H/CYP98A, C4H, CPD/CYP90A1, CYP51G1, CYP71, CYP719, CYP76, CYP80B1, CYP80F1, CYP90D1, DWF4/CYP90B1, F3'5'H/CYP75A, F3'H/CYP75B, F5H/CYP84A, G8O/G8H, IFS, IO, ROT3/CYP90C1, SLS, T16H, T3O |
| BAHD/acyltransferase | 3 | 211 | BAHD, HCT, RAS |
Identification Result List
Search the public identification results for this species; click pathway or family legends above to narrow within this species.
Current family filter: NMT
| Gene | Pathway | Family | Confidence | Status | Best Target |
|---|---|---|---|---|---|
| Cresscaffold392_size3205680144300.1 | Alkaloid | NMT | medium | pass | NMT__00048__sp_Q8W595_SUVR4_ARATH |
| Cresscaffold4247_size77080151220.1 | Alkaloid | NMT | medium | pass | NMT__00054__sp_Q9FF80_SUVH1_ARATH |
| Cresscaffold42_size4908480152870.1 | Alkaloid | NMT | low | borderline | NMT__00019__sp_O22781_SUVH2_ARATH |
| Cresscaffold456_size1225720159440.1 | Alkaloid | NMT | low | borderline | NMT__00056__sp_Q9FNE9_ATXR6_ARATH |
| Cresscaffold45_size3826140160290.1 | Alkaloid | NMT | medium | pass | NMT__00056__sp_Q9FNE9_ATXR6_ARATH |
| Cresscaffold464_size1065390161310.1 | Alkaloid | NMT | medium | borderline | NMT__00023__sp_O82210_ANM12_ARATH |
| Cresscaffold473_size539700163780.1 | Alkaloid | NMT | medium | pass | NMT__00068__sp_Q9XI84_RBCMT_ARATH |
| Cresscaffold490_size728990166940.1 | Alkaloid | NMT | medium | pass | NMT__00020__sp_O23372_ATXR3_ARATH |
| Cresscaffold500_size980070168870.1 | Alkaloid | NMT | medium | pass | NMT__00032__sp_Q5PP37_ATXR2_ARATH |
| Cresscaffold556_size1394740179690.1 | Alkaloid | NMT | medium | borderline | NMT__00011__sp_A9X7L0_ANMT_RUTGR |
| Cresscaffold566_size690300181120.1 | Alkaloid | NMT | low | borderline | NMT__00056__sp_Q9FNE9_ATXR6_ARATH |
| Cresscaffold612_size638730189710.1 | Alkaloid | NMT | medium | pass | NMT__00039__sp_Q84W92_ANM13_ARATH |
| Cresscaffold618_size431130190120.1 | Alkaloid | NMT | low | borderline | NMT__00035__sp_Q6K431_TRX1_ORYSJ |
| Cresscaffold61_size2338150190360.1 | Alkaloid | NMT | low | borderline | NMT__00046__sp_Q8VZ17_SUVH6_ARATH |
| Cresscaffold61_size2338150190370.1 | Alkaloid | NMT | medium | pass | NMT__00046__sp_Q8VZ17_SUVH6_ARATH |
| Cresscaffold659_size1136470196740.1 | Alkaloid | NMT | medium | pass | NMT__00021__sp_O64827_SUVR5_ARATH |
| Cresscaffold668_size682060198360.1 | Alkaloid | NMT | medium | pass | NMT__00028__sp_Q2LAE1_ASHH2_ARATH |
| Cresscaffold69_size1238530202780.1 | Alkaloid | NMT | medium | pass | NMT__00055__sp_Q9FNC7_SUVR2_ARATH |
| Cresscaffold721_size887120206220.1 | Alkaloid | NMT | medium | borderline | NMT__00070__sp_W5U2K2_NMT_CATRO |
| Cresscaffold743_size527300208550.1 | Alkaloid | NMT | low | borderline | NMT__00066__sp_Q9SU94_ANM11_ARATH |
| Cresscaffold750_size1435130209770.1 | Alkaloid | NMT | medium | pass | NMT__00046__sp_Q8VZ17_SUVH6_ARATH |
| Cresscaffold789_size388350216120.1 | Alkaloid | NMT | medium | borderline | NMT__00002__sp_A0A075D6M1_NNMT_RAUSE |
| Cresscaffold78_size2944520216630.1 | Alkaloid | NMT | low | borderline | NMT__00056__sp_Q9FNE9_ATXR6_ARATH |
| Cresscaffold796_size506330217430.1 | Alkaloid | NMT | medium | pass | NMT__00041__sp_Q8GWT4_ANM15_ARATH |
| Cresscaffold812_size294140220250.1 | Alkaloid | NMT | medium | pass | NMT__00035__sp_Q6K431_TRX1_ORYSJ |
| Cresscaffold93_size1367330236120.1 | Alkaloid | NMT | low | borderline | NMT__00024__sp_P0CB22_ATX2_ARATH |
| Cresscaffold982_size252870240130.1 | Alkaloid | NMT | medium | pass | NMT__00067__sp_Q9T0G7_SUVH9_ARATH |
| Cresscaffold983_size432540240170.1 | Alkaloid | NMT | low | borderline | NMT__00033__sp_Q5QD03_SUVH3_CHLRE |