Cardamine resedifolia (cardamine_resedifolia)
Imported from atlas release summary for Cardamine resedifolia.
1405
Candidate Protein Records
1028
Pathway-Level Records
2752
Family-Level Calls
Phylogenetic Position
The current species is positioned within the lineage framework used by this site. Its taxon group is highlighted below.
Species Metadata
Taxon group
Eudicots
Genome status
Genome-level resource available
Site Placement
- This page summarizes pathway coverage, family distributions, and protein/isoform records for the species within the current public dataset.
- If you want to start from the public overview first, open the homepage and then return here for species-level drill-down.
- Family statistics correspond to enzyme families, while pathway statistics correspond to the real category-level pathways.
- Download candidate protein FASTA for this species
Pathway Coverage
6
Pathways
Family Distribution
2752
Family-Level Calls
BAHD
6.47%
C4H
6.07%
C3'H/CYP98A
5.78%
POD
4.29%
CYP76
4.0%
4CL
3.82%
IFS
3.56%
UGT
3.34%
Other Families
62.68%
More Families (96)
7DLGT
86
3.12%
UFGT
85
3.09%
T3O
78
2.83%
NMT
78
2.83%
F3H
73
2.65%
DWF4/CYP90B1
72
2.62%
BR6OX2/CYP85A2
60
2.18%
STR
58
2.11%
F3'H/CYP75B
51
1.85%
CODM/T6ODM
46
1.67%
CYP71
44
1.6%
CSE
43
1.56%
SMT1/SMT2/SMT3
42
1.53%
SGD
35
1.27%
H6H
35
1.27%
CAD
30
1.09%
TRI/TRII
29
1.05%
G8O/G8H
28
1.02%
T16H
28
1.02%
CAS
28
1.02%
PYKS
27
0.98%
IFR
27
0.98%
F5H/CYP84A
27
0.98%
FNS
25
0.91%
LAC
25
0.91%
ANR
20
0.73%
TPS
20
0.73%
GES
19
0.69%
SLS
19
0.69%
RAS
19
0.69%
TAT
19
0.69%
IO
17
0.62%
F3'5'H/CYP75A
17
0.62%
CCR
17
0.62%
COMT
17
0.62%
GS
15
0.55%
LAMT
15
0.55%
BBE
14
0.51%
HCT
14
0.51%
CPD/CYP90A1
14
0.51%
GGPPS
14
0.51%
CNMT
13
0.47%
CYP90D1
13
0.47%
7DLH
12
0.44%
16OMT
12
0.44%
ANS/LDOX
12
0.44%
BR6OX1/CYP85A1
12
0.44%
8HGO
11
0.4%
NCS
11
0.4%
CYP51G1
11
0.4%
MPO
10
0.36%
SQE
10
0.36%
PMT
9
0.33%
PAL
9
0.33%
CCoAOMT
8
0.29%
DFR
7
0.25%
CPR
7
0.25%
FPPS
7
0.25%
CYP719
6
0.22%
COR
6
0.22%
AACT
6
0.22%
MVD
6
0.22%
XMT_MXMT_DXMT
5
0.18%
CYP80B1
5
0.18%
DET2
5
0.18%
ROT3/CYP90C1
5
0.18%
SMO1/SMO2
5
0.18%
DXS
5
0.18%
PMK
5
0.18%
MCT/IspD
5
0.18%
TDC
4
0.15%
CHS
4
0.15%
CHI
4
0.15%
SQS/FDFT1
4
0.15%
MVK
4
0.15%
CMK/IspE
4
0.15%
CYP80F1
3
0.11%
TYDC_DDC
3
0.11%
ADC
2
0.07%
ISY
2
0.07%
HPPR
2
0.07%
DWF7
2
0.07%
DWF5
2
0.07%
DWF1
2
0.07%
MDS/IspF
2
0.07%
HMGR
2
0.07%
IDI
2
0.07%
6OMT_4OMT_SOMT
1
0.04%
FLS
1
0.04%
FK
1
0.04%
CPI1
1
0.04%
HYD1
1
0.04%
HDS/IspG
1
0.04%
HDR/IspH
1
0.04%
HMGS
1
0.04%
DXR
1
0.04%
Species Pathway Results
The links below show identification results for this species within each pathway, instead of opening the global pathway overview.
| Pathway | Pathway-Level Records | Detected Families | Top family | Results |
|---|---|---|---|---|
| Terpenoid pathway | 309 | 19 | BAHD (138) | View species results |
| Phenylpropanoid pathway | 230 | 11 | POD (110) | View species results |
| Alkaloid pathway | 221 | 19 | NMT (43) | View species results |
| Flavonoid pathway | 125 | 9 | UFGT (80) | View species results |
| Rosmarinic acid pathway | 77 | 7 | C4H (32) | View species results |
| Steroid pathway | 66 | 11 | CAS (22) | View species results |
Broad Catalytic Groups
P450/oxygenase and BAHD/acyltransferase are counted separately as broad catalytic groups and are not mixed into the canonical enzyme-family count.
| Catalytic group | Detected families | Assignment calls | Included families |
|---|---|---|---|
| P450/oxygenase | 24 | 1056 | 7DLH, BR6OX1/CYP85A1, BR6OX2/CYP85A2, C3'H/CYP98A, C4H, CPD/CYP90A1, CYP51G1, CYP71, CYP719, CYP76, CYP80B1, CYP80F1, CYP90D1, DWF4/CYP90B1, F3'5'H/CYP75A, F3'H/CYP75B, F5H/CYP84A, G8O/G8H, IFS, IO, ROT3/CYP90C1, SLS, T16H, T3O |
| BAHD/acyltransferase | 3 | 211 | BAHD, HCT, RAS |
Identification Result List
Search the public protein/isoform identification results for this species; click pathway or family legends above to narrow within this species.
| Protein/Isoform Record | Pathway | Family | Confidence | Status |
|---|---|---|---|---|
| Cresscaffold2793_size92690108320.1 | Alkaloid | SGD | medium | pass |
| Cresscaffold305_size1020490118670.1 | Alkaloid | SGD | low | borderline |
| Cresscaffold305_size1020490118680.1 | Alkaloid | SGD | medium | pass |
| Cresscaffold32_size1244620127750.1 | Alkaloid | SGD | low | borderline |
| Cresscaffold508_size1400450170270.1 | Alkaloid | SGD | low | borderline |
| Cresscaffold508_size1400450170280.1 | Alkaloid | SGD | low | borderline |
| Cresscaffold508_size1400450170290.1 | Alkaloid | SGD | medium | pass |
| Cresscaffold51_size1965890172580.1 | Alkaloid | SGD | low | borderline |
| Cresscaffold52_size2892550174810.1 | Alkaloid | SGD | medium | pass |
| Cresscaffold564_size804110181040.1 | Alkaloid | SGD | medium | pass |
| Cresscaffold585_size754320184220.1 | Alkaloid | SGD | medium | pass |
| Cresscaffold690_size482060201560.1 | Alkaloid | SGD | medium | pass |
| Cresscaffold7246_size65810206370.1 | Alkaloid | SGD | medium | pass |
| Cresscaffold72_size1342270207200.1 | Alkaloid | SGD | medium | pass |
| Cresscaffold83_size898020223400.1 | Alkaloid | SGD | low | borderline |
| Cresscaffold84_size1825040224600.1 | Alkaloid | SGD | medium | pass |
| Cresscaffold953_size497550237360.1 | Alkaloid | SGD | medium | pass |
| Cresscaffold9_size4160090241930.1 | Alkaloid | SGD | medium | pass |
| Cresscaffold120_size2307930020600.1 | Alkaloid | SLS | medium | borderline |
| Cresscaffold1216_size211560021080.1 | Alkaloid | SLS | medium | borderline |
| Cresscaffold1271_size354780025920.1 | Alkaloid | SLS | medium | borderline |
| Cresscaffold1361_size217470034120.1 | Alkaloid | SLS | medium | borderline |
| Cresscaffold1373_size190190035230.1 | Alkaloid | SLS | medium | borderline |
| Cresscaffold1672_size238990055800.1 | Alkaloid | SLS | medium | borderline |
| Cresscaffold223_size1621580086550.1 | Alkaloid | SLS | medium | borderline |
| Cresscaffold223_size1621580086560.1 | Alkaloid | SLS | medium | borderline |
| Cresscaffold2251_size117270087150.1 | Alkaloid | SLS | medium | borderline |
| Cresscaffold230_size1219230089410.1 | Alkaloid | SLS | medium | borderline |
| Cresscaffold36_size2860010137250.1 | Alkaloid | SLS | medium | borderline |
| Cresscaffold46_size3603460162740.1 | Alkaloid | SLS | medium | borderline |
| Cresscaffold484_size2254060165660.1 | Alkaloid | SLS | medium | borderline |
| Cresscaffold510_size500170171090.1 | Alkaloid | SLS | medium | borderline |
| Cresscaffold522_size895010173370.1 | Alkaloid | SLS | medium | borderline |
| Cresscaffold651_size503510195660.1 | Alkaloid | SLS | medium | borderline |
| Cresscaffold730_size1002760207260.1 | Alkaloid | SLS | medium | borderline |
| Cresscaffold775_size1051000213600.1 | Alkaloid | SLS | medium | borderline |
| Cresscaffold836_size450260223010.1 | Alkaloid | SLS | medium | borderline |
| Cresscaffold100_size1778590000770.1 | Alkaloid | STR | low | borderline |
| Cresscaffold105_size2351390005180.1 | Alkaloid | STR | medium | pass |
| Cresscaffold105_size2351390005190.1 | Alkaloid | STR | medium | pass |
| Cresscaffold111_size4331150011660.1 | Alkaloid | STR | medium | pass |
| Cresscaffold116_size1895160016240.1 | Alkaloid | STR | low | borderline |
| Cresscaffold117_size1611670017080.1 | Alkaloid | STR | medium | pass |
| Cresscaffold125_size1708720025050.1 | Alkaloid | STR | low | borderline |
| Cresscaffold1290_size246980026930.1 | Alkaloid | STR | low | borderline |
| Cresscaffold12_size5927740027860.1 | Alkaloid | STR | low | borderline |
| Cresscaffold1371_size459890035120.1 | Alkaloid | STR | low | borderline |
| Cresscaffold1371_size459890035130.1 | Alkaloid | STR | medium | pass |
| Cresscaffold1371_size459890035150.1 | Alkaloid | STR | medium | pass |
| Cresscaffold168_size3944630056610.1 | Alkaloid | STR | low | borderline |