Cardamine resedifolia (cardamine_resedifolia)
Imported from atlas release summary for Cardamine resedifolia.
1028
Candidate Genes
104
Families
6
Pathways
Phylogenetic Position
The current species is positioned within the lineage framework used by this site. Its taxon group is highlighted below.
Species Metadata
Taxon group
Eudicots
Genome status
Genome-level resource available
Site Placement
- This page summarizes pathway coverage, family distributions, and the gene list for the species within the current public dataset.
- If you want to start from the public overview first, open the homepage and then return here for species-level drill-down.
- Family statistics correspond to enzyme families, while pathway statistics correspond to the real category-level pathways.
Pathway Coverage
6
Pathways
Family Distribution
1028
Candidate Genes
BAHD
6.47%
C4H
6.07%
C3'H/CYP98A
5.78%
POD
4.29%
CYP76
4.0%
4CL
3.82%
IFS
3.56%
UGT
3.34%
Other Families
62.68%
More Families (96)
7DLGT
86
3.12%
UFGT
85
3.09%
T3O
78
2.83%
NMT
78
2.83%
F3H
73
2.65%
DWF4/CYP90B1
72
2.62%
BR6OX2/CYP85A2
60
2.18%
STR
58
2.11%
F3'H/CYP75B
51
1.85%
CODM/T6ODM
46
1.67%
CYP71
44
1.6%
CSE
43
1.56%
SMT1/SMT2/SMT3
42
1.53%
SGD
35
1.27%
H6H
35
1.27%
CAD
30
1.09%
TRI/TRII
29
1.05%
G8O/G8H
28
1.02%
T16H
28
1.02%
CAS
28
1.02%
PYKS
27
0.98%
IFR
27
0.98%
F5H/CYP84A
27
0.98%
FNS
25
0.91%
LAC
25
0.91%
ANR
20
0.73%
TPS
20
0.73%
GES
19
0.69%
SLS
19
0.69%
RAS
19
0.69%
TAT
19
0.69%
IO
17
0.62%
F3'5'H/CYP75A
17
0.62%
CCR
17
0.62%
COMT
17
0.62%
GS
15
0.55%
LAMT
15
0.55%
BBE
14
0.51%
HCT
14
0.51%
CPD/CYP90A1
14
0.51%
GGPPS
14
0.51%
CNMT
13
0.47%
CYP90D1
13
0.47%
7DLH
12
0.44%
16OMT
12
0.44%
ANS/LDOX
12
0.44%
BR6OX1/CYP85A1
12
0.44%
8HGO
11
0.4%
NCS
11
0.4%
CYP51G1
11
0.4%
MPO
10
0.36%
SQE
10
0.36%
PMT
9
0.33%
PAL
9
0.33%
CCoAOMT
8
0.29%
DFR
7
0.25%
CPR
7
0.25%
FPPS
7
0.25%
CYP719
6
0.22%
COR
6
0.22%
AACT
6
0.22%
MVD
6
0.22%
XMT_MXMT_DXMT
5
0.18%
CYP80B1
5
0.18%
DET2
5
0.18%
ROT3/CYP90C1
5
0.18%
SMO1/SMO2
5
0.18%
DXS
5
0.18%
PMK
5
0.18%
MCT/IspD
5
0.18%
TDC
4
0.15%
CHS
4
0.15%
CHI
4
0.15%
SQS/FDFT1
4
0.15%
MVK
4
0.15%
CMK/IspE
4
0.15%
CYP80F1
3
0.11%
TYDC_DDC
3
0.11%
ADC
2
0.07%
ISY
2
0.07%
HPPR
2
0.07%
DWF7
2
0.07%
DWF5
2
0.07%
DWF1
2
0.07%
MDS/IspF
2
0.07%
HMGR
2
0.07%
IDI
2
0.07%
6OMT_4OMT_SOMT
1
0.04%
FLS
1
0.04%
FK
1
0.04%
CPI1
1
0.04%
HYD1
1
0.04%
HDS/IspG
1
0.04%
HDR/IspH
1
0.04%
HMGS
1
0.04%
DXR
1
0.04%
Species Pathway Results
The links below show identification results for this species within each pathway, instead of opening the global pathway overview.
| Pathway | Candidate Genes | Families | Top family | Results |
|---|---|---|---|---|
| Terpenoid pathway | 309 | 19 | BAHD (138) | View species results |
| Phenylpropanoid pathway | 230 | 11 | POD (110) | View species results |
| Alkaloid pathway | 221 | 19 | NMT (43) | View species results |
| Flavonoid pathway | 125 | 9 | UFGT (80) | View species results |
| Rosmarinic acid pathway | 77 | 7 | C4H (32) | View species results |
| Steroid pathway | 66 | 11 | CAS (22) | View species results |
Broad Catalytic Groups
P450/oxygenase and BAHD/acyltransferase are counted separately as broad catalytic groups and are not mixed into the canonical enzyme-family count.
| Catalytic group | Families | Candidate genes | Included families |
|---|---|---|---|
| P450/oxygenase | 24 | 1056 | 7DLH, BR6OX1/CYP85A1, BR6OX2/CYP85A2, C3'H/CYP98A, C4H, CPD/CYP90A1, CYP51G1, CYP71, CYP719, CYP76, CYP80B1, CYP80F1, CYP90D1, DWF4/CYP90B1, F3'5'H/CYP75A, F3'H/CYP75B, F5H/CYP84A, G8O/G8H, IFS, IO, ROT3/CYP90C1, SLS, T16H, T3O |
| BAHD/acyltransferase | 3 | 211 | BAHD, HCT, RAS |
Identification Result List
Search the public identification results for this species; click pathway or family legends above to narrow within this species.
Current pathway filter: Terpenoid pathway
| Gene | Pathway | Family | Confidence | Status | Best Target |
|---|---|---|---|---|---|
| Cresscaffold1698_size178340057190.1 | Terpenoid | BAHD | low | borderline | BAHD__00025__sp_O64810_SCP10_ARATH |
| Cresscaffold1771_size485930062360.1 | Terpenoid | BAHD | medium | pass | BAHD__00024__sp_O23393_BIA1_ARATH |
| Cresscaffold1771_size485930062390.1 | Terpenoid | BAHD | medium | pass | BAHD__00024__sp_O23393_BIA1_ARATH |
| Cresscaffold1784_size189850062780.1 | Terpenoid | BAHD | medium | pass | BAHD__00025__sp_O64810_SCP10_ARATH |
| Cresscaffold180_size2078800064950.1 | Terpenoid | BAHD | medium | pass | BAHD__00017__sp_F4IDU4_MBOA1_ARATH |
| Cresscaffold1810_size163430065100.1 | Terpenoid | BAHD | medium | pass | BAHD__00035__sp_Q0WQK2_ZDHC9_ARATH |
| Cresscaffold181_size2612130065820.1 | Terpenoid | BAHD | medium | pass | BAHD__00029__sp_O80685_ZDHC4_ARATH |
| Cresscaffold183_size670690066730.1 | Terpenoid | BAHD | medium | pass | BAHD__00050__sp_Q6DR03_ZDHC3_ARATH |
| Cresscaffold183_size670690066850.1 | Terpenoid | BAHD | low | borderline | BAHD__00025__sp_O64810_SCP10_ARATH |
| Cresscaffold185_size1922670067510.1 | Terpenoid | BAHD | medium | pass | BAHD__00039__sp_Q3ZPN4_ACMAT_VITLA |
| Cresscaffold186_size1925990068240.1 | Terpenoid | BAHD | low | borderline | BAHD__00016__sp_D4NUX0_HCT1_ACTRA |
| Cresscaffold189_size1154910069540.1 | Terpenoid | BAHD | medium | pass | BAHD__00077__sp_Q9FNA9_PDAT1_ARATH |
| Cresscaffold18_size2958540070310.1 | Terpenoid | BAHD | medium | pass | BAHD__00007__sp_A0A2Z5CVK5_AT2_CROXC |
| Cresscaffold193_size888280072120.1 | Terpenoid | BAHD | medium | pass | BAHD__00048__sp_Q5M757_ZDH15_ARATH |
| Cresscaffold1944_size318050072360.1 | Terpenoid | BAHD | low | borderline | BAHD__00096__sp_Q9XGY6_WAXS1_SIMCH |
| Cresscaffold195_size1253600073370.1 | Terpenoid | BAHD | low | borderline | BAHD__00059__sp_Q8S8S2_LPCT2_ARATH |
| Cresscaffold196_size727260073660.1 | Terpenoid | BAHD | low | borderline | BAHD__00009__sp_A0A4P1QUJ3_TTHAT_LUPAN |
| Cresscaffold2028_size365550077190.1 | Terpenoid | BAHD | medium | pass | BAHD__00055__sp_Q8H780_SCP13_ARATH |
| Cresscaffold2037_size130780077620.1 | Terpenoid | BAHD | medium | pass | BAHD__00066__sp_Q94CK0_WSD7_ARATH |
| Cresscaffold203_size943380077870.1 | Terpenoid | BAHD | medium | pass | BAHD__00012__sp_A1XWY7_CFAT_PETHY |
| Cresscaffold2055_size282390078340.1 | Terpenoid | BAHD | medium | pass | BAHD__00064__sp_Q93ZR6_WSD1_ARATH |
| Cresscaffold20795_size5630079050.1 | Terpenoid | BAHD | medium | pass | BAHD__00045__sp_Q570C8_THIK5_ARATH |
| Cresscaffold2097_size126870079840.1 | Terpenoid | BAHD | low | borderline | BAHD__00016__sp_D4NUX0_HCT1_ACTRA |
| Cresscaffold209_size1070640080000.1 | Terpenoid | BAHD | medium | pass | BAHD__00087__sp_Q9M3B1_WSD6_ARATH |
| Cresscaffold20_size2649790080580.1 | Terpenoid | BAHD | medium | pass | BAHD__00096__sp_Q9XGY6_WAXS1_SIMCH |
| Cresscaffold20_size2649790080590.1 | Terpenoid | BAHD | low | borderline | BAHD__00096__sp_Q9XGY6_WAXS1_SIMCH |
| Cresscaffold20_size2649790080600.1 | Terpenoid | BAHD | medium | pass | BAHD__00093__sp_Q9SV07_ASAT1_ARATH |
| Cresscaffold2129_size236520081800.1 | Terpenoid | BAHD | low | borderline | BAHD__00055__sp_Q8H780_SCP13_ARATH |
| Cresscaffold212_size2031800082220.1 | Terpenoid | BAHD | medium | pass | BAHD__00094__sp_Q9SYC8_LPAT3_ARATH |
| Cresscaffold2185_size120620084240.1 | Terpenoid | BAHD | medium | pass | BAHD__00081__sp_Q9LJB4_5MAT_ARATH |
| Cresscaffold219_size1938250084800.1 | Terpenoid | BAHD | medium | pass | BAHD__00025__sp_O64810_SCP10_ARATH |
| Cresscaffold227_size2823190088170.1 | Terpenoid | BAHD | medium | pass | BAHD__00047__sp_Q5KS41_WSD11_ARATH |
| Cresscaffold227_size2823190088190.1 | Terpenoid | BAHD | medium | pass | BAHD__00047__sp_Q5KS41_WSD11_ARATH |
| Cresscaffold228_size1306970088520.1 | Terpenoid | BAHD | medium | pass | BAHD__00083__sp_Q9LMM0_GPAT4_ARATH |
| Cresscaffold231_size1175770089880.1 | Terpenoid | BAHD | medium | pass | BAHD__00091__sp_Q9SLD2_DGAT1_ARATH |
| Cresscaffold233_size2012370090670.1 | Terpenoid | BAHD | low | borderline | BAHD__00012__sp_A1XWY7_CFAT_PETHY |
| Cresscaffold234_size3168980091210.1 | Terpenoid | BAHD | medium | pass | BAHD__00043__sp_Q52T38_ZDH22_ARATH |
| Cresscaffold238_size2838920093210.1 | Terpenoid | BAHD | medium | pass | BAHD__00068__sp_Q9C533_ZDHC1_ARATH |
| Cresscaffold23_size2625600094100.1 | Terpenoid | BAHD | low | borderline | BAHD__00059__sp_Q8S8S2_LPCT2_ARATH |
| Cresscaffold241_size1652950094630.1 | Terpenoid | BAHD | medium | pass | BAHD__00081__sp_Q9LJB4_5MAT_ARATH |
| Cresscaffold2434_size278720095150.1 | Terpenoid | BAHD | medium | pass | BAHD__00075__sp_Q9FJB4_GPC1_ARATH |
| Cresscaffold2487_size152910096650.1 | Terpenoid | BAHD | medium | pass | BAHD__00055__sp_Q8H780_SCP13_ARATH |
| Cresscaffold2529_size203320098310.1 | Terpenoid | BAHD | medium | pass | BAHD__00061__sp_Q8VYS8_ZDH24_ARATH |
| Cresscaffold254_size1161710098980.1 | Terpenoid | BAHD | low | borderline | BAHD__00026__sp_O64811_SCP9_ARATH |
| Cresscaffold254_size1161710098990.1 | Terpenoid | BAHD | medium | pass | BAHD__00055__sp_Q8H780_SCP13_ARATH |
| Cresscaffold2557_size197220099200.1 | Terpenoid | BAHD | medium | pass | BAHD__00070__sp_Q9CAN8_MBOA2_ARATH |
| Cresscaffold271_size2063500105650.1 | Terpenoid | BAHD | medium | pass | BAHD__00042__sp_Q500Z2_ZDH20_ARATH |
| Cresscaffold2726_size168580105880.1 | Terpenoid | BAHD | low | borderline | BAHD__00073__sp_Q9FF86_DCR_ARATH |
| Cresscaffold273_size1809000106310.1 | Terpenoid | BAHD | medium | pass | BAHD__00027__sp_O80437_GPAT6_ARATH |
| Cresscaffold278_size579990108260.1 | Terpenoid | BAHD | medium | pass | BAHD__00056__sp_Q8L5Y5_ZDH17_ARATH |