PlantSME Plant secondary metabolism enzyme database

Carex scoparia (carex_scoparia)

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Imported from atlas release summary for Carex scoparia.

1287
Candidate Genes
104
Families
6
Pathways
Phylogenetic Position
The current species is positioned within the lineage framework used by this site. Its taxon group is highlighted below.
Algae
Site group 29
Bryophytes
Site group 125
Lycophytes/Ferns
Site group 4
Gymnosperms
Site group 6
Basal angiosperms
Site group 13
Monocots
Current group 117
Eudicots
Site group 495
Species Metadata
Taxon group
Monocots
Common name
/
Genome status
Genome-level resource available
Site Placement
  • This page summarizes pathway coverage, family distributions, and the gene list for the species within the current public dataset.
  • If you want to start from the public overview first, open the homepage and then return here for species-level drill-down.
  • Family statistics correspond to enzyme families, while pathway statistics correspond to the real category-level pathways.
Pathway Coverage
Phenylpropanoid pathway 28.28% Terpenoid pathway 28.13% Alkaloid pathway 19.66% Flavonoid pathway 9.87% Steroid pathway 7.07% Rosmarinic acid pathway 6.99%
Family Distribution
C4H 7.14% BAHD 6.45% POD 6.39% C3'H/CYP98A 4.61% UGT 4.41% 4CL 4.38% IFS 3.18% CYP76 3.15%
Other Families 60.3%
More Families (96)
F3H 90 2.92% 7DLGT 86 2.79% T3O 85 2.76% UFGT 67 2.17% NMT 60 1.95% CAD 58 1.88% STR 57 1.85% SMT1/SMT2/SMT3 55 1.78% G8O/G8H 50 1.62% CAS 50 1.62% CODM/T6ODM 49 1.59% DWF4/CYP90B1 46 1.49% H6H 44 1.43% CSE 44 1.43% COMT 42 1.36% BR6OX2/CYP85A2 41 1.33% CYP71 40 1.3% 16OMT 35 1.14% TPS 34 1.1% F3'H/CYP75B 33 1.07% PYKS 32 1.04% TRI/TRII 32 1.04% T16H 32 1.04% IFR 32 1.04% LAC 31 1.01% GES 30 0.97% GS 28 0.91% SGD 27 0.88% FNS 27 0.88% ANR 27 0.88% RAS 27 0.88% HCT 26 0.84% COR 25 0.81% PMT 19 0.62% NCS 18 0.58% F5H/CYP84A 18 0.58% CYP90D1 18 0.58% 8HGO 17 0.55% F3'5'H/CYP75A 17 0.55% CPD/CYP90A1 17 0.55% CCR 16 0.52% IO 13 0.42% ANS/LDOX 11 0.36% TAT 11 0.36% BBE 10 0.32% CHS 10 0.32% DFR 10 0.32% GGPPS 10 0.32% LAMT 9 0.29% CNMT 9 0.29% CHI 9 0.29% PAL 9 0.29% CYP51G1 9 0.29% BR6OX1/CYP85A1 9 0.29% FPPS 9 0.29% 7DLH 8 0.26% AACT 8 0.26% CYP80B1 7 0.23% SLS 7 0.23% CCoAOMT 7 0.23% HPPR 7 0.23% CYP719 6 0.19% CPR 6 0.19% DET2 6 0.19% ROT3/CYP90C1 6 0.19% TYDC_DDC 5 0.16% SQS/FDFT1 5 0.16% MPO 4 0.13% HMGR 4 0.13% CMK/IspE 4 0.13% MVD 4 0.13% PMK 4 0.13% MVK 4 0.13% ISY 3 0.1% SMO1/SMO2 3 0.1% DWF1 3 0.1% TDC 2 0.06% FLS 2 0.06% HYD1 2 0.06% DXR 2 0.06% IDI 2 0.06% HDR/IspH 2 0.06% DXS 2 0.06% MCT/IspD 2 0.06% XMT_MXMT_DXMT 1 0.03% 6OMT_4OMT_SOMT 1 0.03% ADC 1 0.03% DWF5 1 0.03% FK 1 0.03% CPI1 1 0.03% SQE 1 0.03% DWF7 1 0.03% HMGS 1 0.03% GPPS 1 0.03% MDS/IspF 1 0.03% HDS/IspG 1 0.03%
Species Pathway Results
The links below show identification results for this species within each pathway, instead of opening the global pathway overview.
Pathway Candidate Genes Families Top family Results
Phenylpropanoid pathway 364 12 POD (188) View species results
Terpenoid pathway 362 21 BAHD (148) View species results
Alkaloid pathway 253 24 NMT (33) View species results
Flavonoid pathway 127 11 UFGT (49) View species results
Steroid pathway 91 12 CAS (42) View species results
Rosmarinic acid pathway 90 7 4CL (32) View species results
Broad Catalytic Groups
P450/oxygenase and BAHD/acyltransferase are counted separately as broad catalytic groups and are not mixed into the canonical enzyme-family count.
Catalytic group Families Candidate genes Included families
P450/oxygenase 23 1019 7DLH, BR6OX1/CYP85A1, BR6OX2/CYP85A2, C3'H/CYP98A, C4H, CPD/CYP90A1, CYP51G1, CYP71, CYP719, CYP76, CYP80B1, CYP90D1, DWF4/CYP90B1, F3'5'H/CYP75A, F3'H/CYP75B, F5H/CYP84A, G8O/G8H, IFS, IO, ROT3/CYP90C1, SLS, T16H, T3O
BAHD/acyltransferase 3 252 BAHD, HCT, RAS
Identification Result List
Search the public identification results for this species; click pathway or family legends above to narrow within this species.
Current family filter: CHI
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Gene Pathway Family Confidence Status Best Target
Csco02g03500.1 Flavonoid CHI medium pass CHI__00010__sp_Q53B74_CFI2A_SOYBN
Csco05g04910.1 Flavonoid CHI medium pass CHI__00002__sp_A0A2U7XUH7_CHIL1_HUMLU
Csco05g04940.1 Flavonoid CHI low borderline CHI__00002__sp_A0A2U7XUH7_CHIL1_HUMLU
Csco07g04620.1 Flavonoid CHI medium pass CHI__00015__sp_Q8S3X0_CFI_HORVU
Csco07g04630.1 Flavonoid CHI medium pass CHI__00003__sp_O65333_CFI_ELAUM
Csco07g04640.1 Flavonoid CHI medium pass CHI__00004__sp_P11650_CFI1_PETHY
Csco09g03580.1 Flavonoid CHI medium pass CHI__00006__sp_P41088_CFI1_ARATH
Csco12g04060.1 Flavonoid CHI medium pass CHI__00001__sp_A0A2U7XUE3_CHIL2_HUMLU
Csco22g05460.1 Flavonoid CHI medium pass CHI__00012__sp_Q8H0G1_CFI2_LOTJA