PlantSME Plant secondary metabolism enzyme database

Carex scoparia (carex_scoparia)

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Imported from atlas release summary for Carex scoparia.

1287
Candidate Genes
104
Families
6
Pathways
Phylogenetic Position
The current species is positioned within the lineage framework used by this site. Its taxon group is highlighted below.
Species Metadata
Taxon group
Monocots
Common name
/
Genome status
Genome-level resource available
Site Placement
  • This page summarizes pathway coverage, family distributions, and the gene list for the species within the current public dataset.
  • If you want to start from the public overview first, open the homepage and then return here for species-level drill-down.
  • Family statistics correspond to enzyme families, while pathway statistics correspond to the real category-level pathways.
Family Distribution
More Families (96)
Species Pathway Results
The links below show identification results for this species within each pathway, instead of opening the global pathway overview.
Pathway Candidate Genes Families Top family Results
Phenylpropanoid pathway 364 12 POD (188) View species results
Terpenoid pathway 362 21 BAHD (148) View species results
Alkaloid pathway 253 24 NMT (33) View species results
Flavonoid pathway 127 11 UFGT (49) View species results
Steroid pathway 91 12 CAS (42) View species results
Rosmarinic acid pathway 90 7 4CL (32) View species results
Broad Catalytic Groups
P450/oxygenase and BAHD/acyltransferase are counted separately as broad catalytic groups and are not mixed into the canonical enzyme-family count.
Catalytic group Families Candidate genes Included families
P450/oxygenase 23 1019 7DLH, BR6OX1/CYP85A1, BR6OX2/CYP85A2, C3'H/CYP98A, C4H, CPD/CYP90A1, CYP51G1, CYP71, CYP719, CYP76, CYP80B1, CYP90D1, DWF4/CYP90B1, F3'5'H/CYP75A, F3'H/CYP75B, F5H/CYP84A, G8O/G8H, IFS, IO, ROT3/CYP90C1, SLS, T16H, T3O
BAHD/acyltransferase 3 252 BAHD, HCT, RAS
Identification Result List
Search the public identification results for this species; click pathway or family legends above to narrow within this species.
Current pathway filter: Phenylpropanoid pathway
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Gene Pathway Family Confidence Status
Csco01g07730.1 Phenylpropanoid 4CL medium pass
Csco01g09980.1 Phenylpropanoid 4CL medium pass
Csco01g09990.1 Phenylpropanoid 4CL medium pass
Csco01g10000.1 Phenylpropanoid 4CL medium pass
Csco01g10010.1 Phenylpropanoid 4CL medium pass
Csco02g04800.1 Phenylpropanoid 4CL medium pass
Csco03g00900.1 Phenylpropanoid 4CL low borderline
Csco05g05300.1 Phenylpropanoid 4CL low borderline
Csco06g03780.1 Phenylpropanoid 4CL low borderline
Csco07g10520.1 Phenylpropanoid 4CL medium pass
Csco07g10650.1 Phenylpropanoid 4CL medium pass
Csco08g07770.1 Phenylpropanoid 4CL medium pass
Csco08g09260.1 Phenylpropanoid 4CL medium pass
Csco09g03610.1 Phenylpropanoid 4CL medium pass
Csco09g03620.1 Phenylpropanoid 4CL medium pass
Csco09g03630.1 Phenylpropanoid 4CL medium pass
Csco09g03640.1 Phenylpropanoid 4CL medium pass
Csco09g03850.1 Phenylpropanoid 4CL medium pass
Csco11g02160.1 Phenylpropanoid 4CL medium pass
Csco13g05780.1 Phenylpropanoid 4CL medium pass
Csco14g01270.1 Phenylpropanoid 4CL medium pass
Csco14g01550.1 Phenylpropanoid 4CL low borderline
Csco14g02260.1 Phenylpropanoid 4CL medium pass
Csco16g01030.1 Phenylpropanoid 4CL medium pass
Csco16g05860.1 Phenylpropanoid 4CL medium pass
Csco16g06290.1 Phenylpropanoid 4CL low borderline
Csco17g00420.1 Phenylpropanoid 4CL low borderline
Csco17g00470.1 Phenylpropanoid 4CL low borderline
Csco17g02870.1 Phenylpropanoid 4CL low borderline
Csco17g06180.1 Phenylpropanoid 4CL low borderline
Csco21g01260.1 Phenylpropanoid 4CL medium pass
Csco23g03830.1 Phenylpropanoid 4CL medium pass
Csco23g03840.1 Phenylpropanoid 4CL medium pass
Csco24g00930.1 Phenylpropanoid 4CL low borderline
Csco26g02570.1 Phenylpropanoid 4CL low borderline
Csco26g04790.1 Phenylpropanoid 4CL low borderline
Csco27g07330.1 Phenylpropanoid 4CL medium pass
Csco28g01300.1 Phenylpropanoid 4CL medium pass
Csco28g01310.1 Phenylpropanoid 4CL medium pass
Csco30g02130.1 Phenylpropanoid 4CL medium pass
Csco30g02140.1 Phenylpropanoid 4CL medium pass
Csco30g02850.1 Phenylpropanoid 4CL low borderline
Csco30g05150.1 Phenylpropanoid 4CL medium pass
Csco31g02030.1 Phenylpropanoid 4CL medium pass
Csco31g02040.1 Phenylpropanoid 4CL medium pass
Csco01g00250.1 Phenylpropanoid C3'H/CYP98A low borderline
Csco01g02280.1 Phenylpropanoid C3'H/CYP98A low borderline
Csco01g03810.1 Phenylpropanoid C3'H/CYP98A medium borderline
Csco01g07080.1 Phenylpropanoid C3'H/CYP98A low borderline
Csco01g09060.1 Phenylpropanoid C3'H/CYP98A medium borderline