PlantSME Plant secondary metabolism enzyme database

Carex scoparia (carex_scoparia)

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Imported from atlas release summary for Carex scoparia.

1287
Candidate Genes
104
Families
6
Pathways
Phylogenetic Position
The current species is positioned within the lineage framework used by this site. Its taxon group is highlighted below.
Species Metadata
Taxon group
Monocots
Common name
/
Genome status
Genome-level resource available
Site Placement
  • This page summarizes pathway coverage, family distributions, and the gene list for the species within the current public dataset.
  • If you want to start from the public overview first, open the homepage and then return here for species-level drill-down.
  • Family statistics correspond to enzyme families, while pathway statistics correspond to the real category-level pathways.
Family Distribution
More Families (96)
Species Pathway Results
The links below show identification results for this species within each pathway, instead of opening the global pathway overview.
Pathway Candidate Genes Families Top family Results
Phenylpropanoid pathway 364 12 POD (188) View species results
Terpenoid pathway 362 21 BAHD (148) View species results
Alkaloid pathway 253 24 NMT (33) View species results
Flavonoid pathway 127 11 UFGT (49) View species results
Steroid pathway 91 12 CAS (42) View species results
Rosmarinic acid pathway 90 7 4CL (32) View species results
Broad Catalytic Groups
P450/oxygenase and BAHD/acyltransferase are counted separately as broad catalytic groups and are not mixed into the canonical enzyme-family count.
Catalytic group Families Candidate genes Included families
P450/oxygenase 23 1019 7DLH, BR6OX1/CYP85A1, BR6OX2/CYP85A2, C3'H/CYP98A, C4H, CPD/CYP90A1, CYP51G1, CYP71, CYP719, CYP76, CYP80B1, CYP90D1, DWF4/CYP90B1, F3'5'H/CYP75A, F3'H/CYP75B, F5H/CYP84A, G8O/G8H, IFS, IO, ROT3/CYP90C1, SLS, T16H, T3O
BAHD/acyltransferase 3 252 BAHD, HCT, RAS
Identification Result List
Search the public identification results for this species; click pathway or family legends above to narrow within this species.
Current family filter: G8O/G8H
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Gene Pathway Family Confidence Status
Csco01g06190.1 Alkaloid G8O/G8H low borderline
Csco01g07960.1 Alkaloid G8O/G8H medium borderline
Csco01g09100.1 Alkaloid G8O/G8H medium borderline
Csco01g09120.1 Alkaloid G8O/G8H low borderline
Csco02g00170.1 Alkaloid G8O/G8H medium pass
Csco02g01410.1 Alkaloid G8O/G8H medium borderline
Csco02g01530.1 Alkaloid G8O/G8H low borderline
Csco02g01630.1 Alkaloid G8O/G8H medium borderline
Csco02g03910.1 Alkaloid G8O/G8H medium borderline
Csco02g04400.1 Alkaloid G8O/G8H medium borderline
Csco02g05460.1 Alkaloid G8O/G8H medium borderline
Csco02g08560.1 Alkaloid G8O/G8H medium borderline
Csco03g01650.1 Alkaloid G8O/G8H medium borderline
Csco03g01660.1 Alkaloid G8O/G8H medium borderline
Csco03g01670.1 Alkaloid G8O/G8H medium borderline
Csco03g01680.1 Alkaloid G8O/G8H medium borderline
Csco04g03880.1 Alkaloid G8O/G8H medium borderline
Csco06g03000.1 Alkaloid G8O/G8H medium borderline
Csco06g08060.1 Alkaloid G8O/G8H low borderline
Csco09g05310.1 Alkaloid G8O/G8H medium borderline
Csco09g05660.1 Alkaloid G8O/G8H medium borderline
Csco09g05680.1 Alkaloid G8O/G8H medium borderline
Csco10g04680.1 Alkaloid G8O/G8H medium borderline
Csco10g04690.1 Alkaloid G8O/G8H medium borderline
Csco11g06950.1 Alkaloid G8O/G8H medium borderline
Csco13g03020.1 Alkaloid G8O/G8H low borderline
Csco13g03410.1 Alkaloid G8O/G8H medium borderline
Csco13g03920.1 Alkaloid G8O/G8H medium borderline
Csco14g02840.1 Alkaloid G8O/G8H medium borderline
Csco14g02980.1 Alkaloid G8O/G8H medium borderline
Csco15g00910.1 Alkaloid G8O/G8H medium borderline
Csco15g02200.1 Alkaloid G8O/G8H medium borderline
Csco15g02210.1 Alkaloid G8O/G8H medium borderline
Csco15g03130.1 Alkaloid G8O/G8H low borderline
Csco17g01290.1 Alkaloid G8O/G8H medium pass
Csco17g01460.1 Alkaloid G8O/G8H medium borderline
Csco17g06920.1 Alkaloid G8O/G8H medium borderline
Csco17g07640.1 Alkaloid G8O/G8H low borderline
Csco18g01140.1 Alkaloid G8O/G8H medium borderline
Csco19g06240.1 Alkaloid G8O/G8H low borderline
Csco20g00480.1 Alkaloid G8O/G8H medium borderline
Csco21g04970.1 Alkaloid G8O/G8H medium borderline
Csco22g05140.1 Alkaloid G8O/G8H medium borderline
Csco22g05180.1 Alkaloid G8O/G8H medium borderline
Csco24g01670.1 Alkaloid G8O/G8H low borderline
Csco24g02400.1 Alkaloid G8O/G8H low borderline
Csco24g03080.1 Alkaloid G8O/G8H medium pass
Csco25g04620.1 Alkaloid G8O/G8H medium borderline
Csco26g01820.1 Alkaloid G8O/G8H medium borderline
Csco32g03070.1 Alkaloid G8O/G8H low borderline