PlantSME Plant secondary metabolism enzyme database

Carex scoparia (carex_scoparia)

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Imported from atlas release summary for Carex scoparia.

1287
Candidate Genes
104
Families
6
Pathways
Phylogenetic Position
The current species is positioned within the lineage framework used by this site. Its taxon group is highlighted below.
Species Metadata
Taxon group
Monocots
Common name
/
Genome status
Genome-level resource available
Site Placement
  • This page summarizes pathway coverage, family distributions, and the gene list for the species within the current public dataset.
  • If you want to start from the public overview first, open the homepage and then return here for species-level drill-down.
  • Family statistics correspond to enzyme families, while pathway statistics correspond to the real category-level pathways.
Family Distribution
More Families (96)
Species Pathway Results
The links below show identification results for this species within each pathway, instead of opening the global pathway overview.
Pathway Candidate Genes Families Top family Results
Phenylpropanoid pathway 364 12 POD (188) View species results
Terpenoid pathway 362 21 BAHD (148) View species results
Alkaloid pathway 253 24 NMT (33) View species results
Flavonoid pathway 127 11 UFGT (49) View species results
Steroid pathway 91 12 CAS (42) View species results
Rosmarinic acid pathway 90 7 4CL (32) View species results
Broad Catalytic Groups
P450/oxygenase and BAHD/acyltransferase are counted separately as broad catalytic groups and are not mixed into the canonical enzyme-family count.
Catalytic group Families Candidate genes Included families
P450/oxygenase 23 1019 7DLH, BR6OX1/CYP85A1, BR6OX2/CYP85A2, C3'H/CYP98A, C4H, CPD/CYP90A1, CYP51G1, CYP71, CYP719, CYP76, CYP80B1, CYP90D1, DWF4/CYP90B1, F3'5'H/CYP75A, F3'H/CYP75B, F5H/CYP84A, G8O/G8H, IFS, IO, ROT3/CYP90C1, SLS, T16H, T3O
BAHD/acyltransferase 3 252 BAHD, HCT, RAS
Identification Result List
Search the public identification results for this species; click pathway or family legends above to narrow within this species.
Current family filter: COMT
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Gene Pathway Family Confidence Status
Csco01g08140.1 Phenylpropanoid COMT low borderline
Csco01g08150.1 Phenylpropanoid COMT medium pass
Csco01g08160.1 Phenylpropanoid COMT medium pass
Csco01g08180.1 Phenylpropanoid COMT medium pass
Csco03g04680.1 Phenylpropanoid COMT medium pass
Csco04g04090.1 Phenylpropanoid COMT medium pass
Csco04g06340.1 Phenylpropanoid COMT medium pass
Csco04g06380.1 Phenylpropanoid COMT low borderline
Csco04g06390.1 Phenylpropanoid COMT medium pass
Csco04g06410.1 Phenylpropanoid COMT low borderline
Csco04g06440.1 Phenylpropanoid COMT low borderline
Csco05g10620.1 Phenylpropanoid COMT medium pass
Csco05g10640.1 Phenylpropanoid COMT medium pass
Csco08g02480.1 Phenylpropanoid COMT low borderline
Csco09g03970.1 Phenylpropanoid COMT medium pass
Csco09g03990.1 Phenylpropanoid COMT low borderline
Csco09g04010.1 Phenylpropanoid COMT low borderline
Csco09g06440.1 Phenylpropanoid COMT medium pass
Csco09g06450.1 Phenylpropanoid COMT medium pass
Csco09g06470.1 Phenylpropanoid COMT medium pass
Csco14g03120.1 Phenylpropanoid COMT medium pass
Csco14g03660.1 Phenylpropanoid COMT low borderline
Csco15g05600.1 Phenylpropanoid COMT medium pass
Csco16g06330.1 Phenylpropanoid COMT medium pass
Csco18g01890.1 Phenylpropanoid COMT medium pass
Csco18g04040.1 Phenylpropanoid COMT medium pass
Csco18g04050.1 Phenylpropanoid COMT medium pass
Csco18g04070.1 Phenylpropanoid COMT medium pass
Csco19g00560.1 Phenylpropanoid COMT medium pass
Csco19g02680.1 Phenylpropanoid COMT low borderline
Csco19g02690.1 Phenylpropanoid COMT medium pass
Csco19g02700.1 Phenylpropanoid COMT medium pass
Csco19g02720.1 Phenylpropanoid COMT medium pass
Csco21g01800.1 Phenylpropanoid COMT medium pass
Csco22g05250.1 Phenylpropanoid COMT medium pass
Csco26g05070.1 Phenylpropanoid COMT medium pass
Csco27g04450.1 Phenylpropanoid COMT medium pass
Csco27g04460.1 Phenylpropanoid COMT medium pass
Csco32g00130.1 Phenylpropanoid COMT medium pass
Csco33g00040.1 Phenylpropanoid COMT low borderline
Csco33g00060.1 Phenylpropanoid COMT low borderline
Csco33g03150.1 Phenylpropanoid COMT low borderline