Carex scoparia (carex_scoparia)
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Imported from atlas release summary for Carex scoparia.
1287
Candidate Genes
104
Families
6
Pathways
Phylogenetic Position
The current species is positioned within the lineage framework used by this site. Its taxon group is highlighted below.
Species Metadata
Taxon group
Monocots
Common name
/
Genome status
Genome-level resource available
Site Placement
- This page summarizes pathway coverage, family distributions, and the gene list for the species within the current public dataset.
- If you want to start from the public overview first, open the homepage and then return here for species-level drill-down.
- Family statistics correspond to enzyme families, while pathway statistics correspond to the real category-level pathways.
Pathway Coverage
6
Pathways
Family Distribution
1287
Candidate Genes
C4H
7.14%
BAHD
6.45%
POD
6.39%
C3'H/CYP98A
4.61%
UGT
4.41%
4CL
4.38%
IFS
3.18%
CYP76
3.15%
Other Families
60.3%
More Families (96)
F3H
90
2.92%
7DLGT
86
2.79%
T3O
85
2.76%
UFGT
67
2.17%
NMT
60
1.95%
CAD
58
1.88%
STR
57
1.85%
SMT1/SMT2/SMT3
55
1.78%
G8O/G8H
50
1.62%
CAS
50
1.62%
CODM/T6ODM
49
1.59%
DWF4/CYP90B1
46
1.49%
H6H
44
1.43%
CSE
44
1.43%
COMT
42
1.36%
BR6OX2/CYP85A2
41
1.33%
CYP71
40
1.3%
16OMT
35
1.14%
TPS
34
1.1%
F3'H/CYP75B
33
1.07%
PYKS
32
1.04%
TRI/TRII
32
1.04%
T16H
32
1.04%
IFR
32
1.04%
LAC
31
1.01%
GES
30
0.97%
GS
28
0.91%
SGD
27
0.88%
FNS
27
0.88%
ANR
27
0.88%
RAS
27
0.88%
HCT
26
0.84%
COR
25
0.81%
PMT
19
0.62%
NCS
18
0.58%
F5H/CYP84A
18
0.58%
CYP90D1
18
0.58%
8HGO
17
0.55%
F3'5'H/CYP75A
17
0.55%
CPD/CYP90A1
17
0.55%
CCR
16
0.52%
IO
13
0.42%
ANS/LDOX
11
0.36%
TAT
11
0.36%
BBE
10
0.32%
CHS
10
0.32%
DFR
10
0.32%
GGPPS
10
0.32%
LAMT
9
0.29%
CNMT
9
0.29%
CHI
9
0.29%
PAL
9
0.29%
CYP51G1
9
0.29%
BR6OX1/CYP85A1
9
0.29%
FPPS
9
0.29%
7DLH
8
0.26%
AACT
8
0.26%
CYP80B1
7
0.23%
SLS
7
0.23%
CCoAOMT
7
0.23%
HPPR
7
0.23%
CYP719
6
0.19%
CPR
6
0.19%
DET2
6
0.19%
ROT3/CYP90C1
6
0.19%
TYDC_DDC
5
0.16%
SQS/FDFT1
5
0.16%
MPO
4
0.13%
HMGR
4
0.13%
CMK/IspE
4
0.13%
MVD
4
0.13%
PMK
4
0.13%
MVK
4
0.13%
ISY
3
0.1%
SMO1/SMO2
3
0.1%
DWF1
3
0.1%
TDC
2
0.06%
FLS
2
0.06%
HYD1
2
0.06%
DXR
2
0.06%
IDI
2
0.06%
HDR/IspH
2
0.06%
DXS
2
0.06%
MCT/IspD
2
0.06%
XMT_MXMT_DXMT
1
0.03%
6OMT_4OMT_SOMT
1
0.03%
ADC
1
0.03%
DWF5
1
0.03%
FK
1
0.03%
CPI1
1
0.03%
SQE
1
0.03%
DWF7
1
0.03%
HMGS
1
0.03%
GPPS
1
0.03%
MDS/IspF
1
0.03%
HDS/IspG
1
0.03%
Species Pathway Results
The links below show identification results for this species within each pathway, instead of opening the global pathway overview.
| Pathway | Candidate Genes | Families | Top family | Results |
|---|---|---|---|---|
| Phenylpropanoid pathway | 364 | 12 | POD (188) | View species results |
| Terpenoid pathway | 362 | 21 | BAHD (148) | View species results |
| Alkaloid pathway | 253 | 24 | NMT (33) | View species results |
| Flavonoid pathway | 127 | 11 | UFGT (49) | View species results |
| Steroid pathway | 91 | 12 | CAS (42) | View species results |
| Rosmarinic acid pathway | 90 | 7 | 4CL (32) | View species results |
Broad Catalytic Groups
P450/oxygenase and BAHD/acyltransferase are counted separately as broad catalytic groups and are not mixed into the canonical enzyme-family count.
| Catalytic group | Families | Candidate genes | Included families |
|---|---|---|---|
| P450/oxygenase | 23 | 1019 | 7DLH, BR6OX1/CYP85A1, BR6OX2/CYP85A2, C3'H/CYP98A, C4H, CPD/CYP90A1, CYP51G1, CYP71, CYP719, CYP76, CYP80B1, CYP90D1, DWF4/CYP90B1, F3'5'H/CYP75A, F3'H/CYP75B, F5H/CYP84A, G8O/G8H, IFS, IO, ROT3/CYP90C1, SLS, T16H, T3O |
| BAHD/acyltransferase | 3 | 252 | BAHD, HCT, RAS |
Identification Result List
Search the public identification results for this species; click pathway or family legends above to narrow within this species.
Current family filter: STR
| Gene | Pathway | Family | Confidence | Status | Best Target |
|---|---|---|---|---|---|
| Csco01g09970.1 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| Csco02g00410.1 | Alkaloid | STR | medium | pass | STR__00001__sp_D3GE74_STR1_MEDTR |
| Csco02g01180.1 | Alkaloid | STR | medium | pass | STR__00001__sp_D3GE74_STR1_MEDTR |
| Csco02g01550.1 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| Csco02g03300.1 | Alkaloid | STR | medium | pass | STR__00001__sp_D3GE74_STR1_MEDTR |
| Csco02g05420.1 | Alkaloid | STR | medium | pass | STR__00003__sp_Q9M1B4_SSL13_ARATH |
| Csco02g07830.1 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| Csco02g07840.1 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| Csco03g06350.1 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| Csco04g00700.1 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| Csco04g03370.1 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| Csco04g08250.1 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| Csco05g05910.1 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| Csco05g09160.1 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| Csco05g09200.1 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| Csco07g10530.1 | Alkaloid | STR | low | borderline | STR__00003__sp_Q9M1B4_SSL13_ARATH |
| Csco08g06500.1 | Alkaloid | STR | medium | pass | STR__00001__sp_D3GE74_STR1_MEDTR |
| Csco09g02770.1 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| Csco09g05490.1 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| Csco09g05500.1 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| Csco09g05510.1 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| Csco10g02820.1 | Alkaloid | STR | medium | pass | STR__00001__sp_D3GE74_STR1_MEDTR |
| Csco10g02830.1 | Alkaloid | STR | medium | pass | STR__00001__sp_D3GE74_STR1_MEDTR |
| Csco11g07620.1 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| Csco12g07430.1 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| Csco13g03010.1 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| Csco13g03050.1 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| Csco13g05830.1 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| Csco14g05810.1 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| Csco15g02370.1 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| Csco16g04040.1 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| Csco17g00210.1 | Alkaloid | STR | medium | pass | STR__00003__sp_Q9M1B4_SSL13_ARATH |
| Csco17g00220.1 | Alkaloid | STR | low | borderline | STR__00003__sp_Q9M1B4_SSL13_ARATH |
| Csco17g02210.1 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| Csco17g02230.1 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| Csco17g02240.1 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| Csco17g02250.1 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| Csco17g02260.1 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| Csco17g02720.1 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| Csco18g00250.1 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| Csco19g03300.1 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| Csco19g06770.1 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| Csco20g01750.1 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| Csco21g00120.1 | Alkaloid | STR | medium | pass | STR__00001__sp_D3GE74_STR1_MEDTR |
| Csco22g03140.1 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| Csco23g00710.1 | Alkaloid | STR | medium | pass | STR__00003__sp_Q9M1B4_SSL13_ARATH |
| Csco23g02860.1 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| Csco24g05440.1 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| Csco25g00240.1 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| Csco25g00250.1 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |