PlantSME Plant secondary metabolism enzyme database

Carex scoparia (carex_scoparia)

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Imported from atlas release summary for Carex scoparia.

1287
Candidate Genes
104
Families
6
Pathways
Phylogenetic Position
The current species is positioned within the lineage framework used by this site. Its taxon group is highlighted below.
Species Metadata
Taxon group
Monocots
Common name
/
Genome status
Genome-level resource available
Site Placement
  • This page summarizes pathway coverage, family distributions, and the gene list for the species within the current public dataset.
  • If you want to start from the public overview first, open the homepage and then return here for species-level drill-down.
  • Family statistics correspond to enzyme families, while pathway statistics correspond to the real category-level pathways.
Family Distribution
More Families (96)
Species Pathway Results
The links below show identification results for this species within each pathway, instead of opening the global pathway overview.
Pathway Candidate Genes Families Top family Results
Phenylpropanoid pathway 364 12 POD (188) View species results
Terpenoid pathway 362 21 BAHD (148) View species results
Alkaloid pathway 253 24 NMT (33) View species results
Flavonoid pathway 127 11 UFGT (49) View species results
Steroid pathway 91 12 CAS (42) View species results
Rosmarinic acid pathway 90 7 4CL (32) View species results
Broad Catalytic Groups
P450/oxygenase and BAHD/acyltransferase are counted separately as broad catalytic groups and are not mixed into the canonical enzyme-family count.
Catalytic group Families Candidate genes Included families
P450/oxygenase 23 1019 7DLH, BR6OX1/CYP85A1, BR6OX2/CYP85A2, C3'H/CYP98A, C4H, CPD/CYP90A1, CYP51G1, CYP71, CYP719, CYP76, CYP80B1, CYP90D1, DWF4/CYP90B1, F3'5'H/CYP75A, F3'H/CYP75B, F5H/CYP84A, G8O/G8H, IFS, IO, ROT3/CYP90C1, SLS, T16H, T3O
BAHD/acyltransferase 3 252 BAHD, HCT, RAS
Identification Result List
Search the public identification results for this species; click pathway or family legends above to narrow within this species.
Current family filter: F3H
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Gene Pathway Family Confidence Status
Csco12g07090.1 Flavonoid F3H medium borderline
Csco12g07100.1 Flavonoid F3H medium borderline
Csco15g00940.1 Flavonoid F3H medium borderline
Csco15g01700.1 Flavonoid F3H medium borderline
Csco15g01870.1 Flavonoid F3H medium borderline
Csco15g08450.1 Flavonoid F3H medium borderline
Csco17g00320.1 Flavonoid F3H low borderline
Csco17g01570.1 Flavonoid F3H medium borderline
Csco17g06820.1 Flavonoid F3H medium borderline
Csco18g00730.1 Flavonoid F3H medium borderline
Csco19g02190.1 Flavonoid F3H medium borderline
Csco19g02230.1 Flavonoid F3H medium borderline
Csco19g02250.1 Flavonoid F3H medium borderline
Csco19g02280.1 Flavonoid F3H medium borderline
Csco19g02290.1 Flavonoid F3H medium borderline
Csco19g03310.1 Flavonoid F3H medium pass
Csco19g05750.1 Flavonoid F3H low borderline
Csco20g05230.1 Flavonoid F3H medium borderline
Csco20g05240.1 Flavonoid F3H medium borderline
Csco20g05250.1 Flavonoid F3H medium borderline
Csco21g01370.1 Flavonoid F3H medium borderline
Csco21g01380.1 Flavonoid F3H medium borderline
Csco21g06950.1 Flavonoid F3H medium borderline
Csco22g00200.1 Flavonoid F3H medium borderline
Csco22g06110.1 Flavonoid F3H medium borderline
Csco23g00850.1 Flavonoid F3H medium borderline
Csco23g02380.1 Flavonoid F3H medium borderline
Csco24g01130.1 Flavonoid F3H medium borderline
Csco24g01560.1 Flavonoid F3H medium borderline
Csco26g01860.1 Flavonoid F3H medium borderline
Csco27g03550.1 Flavonoid F3H medium borderline
Csco28g03700.1 Flavonoid F3H medium borderline
Csco28g03710.1 Flavonoid F3H medium borderline
Csco28g05250.1 Flavonoid F3H low borderline
Csco28g05760.1 Flavonoid F3H medium borderline
Csco28g05770.1 Flavonoid F3H medium borderline
Csco29g01150.1 Flavonoid F3H medium borderline
Csco29g03770.1 Flavonoid F3H medium borderline
Csco29g04670.1 Flavonoid F3H medium borderline
Csco33g01010.1 Flavonoid F3H medium borderline