PlantSME Plant secondary metabolism enzyme database

Carex scoparia (carex_scoparia)

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Imported from atlas release summary for Carex scoparia.

1287
Candidate Genes
104
Families
6
Pathways
Phylogenetic Position
The current species is positioned within the lineage framework used by this site. Its taxon group is highlighted below.
Algae
Site group 29
Bryophytes
Site group 125
Lycophytes/Ferns
Site group 4
Gymnosperms
Site group 6
Basal angiosperms
Site group 13
Monocots
Current group 117
Eudicots
Site group 495
Species Metadata
Taxon group
Monocots
Common name
/
Genome status
Genome-level resource available
Site Placement
  • This page summarizes pathway coverage, family distributions, and the gene list for the species within the current public dataset.
  • If you want to start from the public overview first, open the homepage and then return here for species-level drill-down.
  • Family statistics correspond to enzyme families, while pathway statistics correspond to the real category-level pathways.
Pathway Coverage
Phenylpropanoid pathway 28.28% Terpenoid pathway 28.13% Alkaloid pathway 19.66% Flavonoid pathway 9.87% Steroid pathway 7.07% Rosmarinic acid pathway 6.99%
Family Distribution
C4H 7.14% BAHD 6.45% POD 6.39% C3'H/CYP98A 4.61% UGT 4.41% 4CL 4.38% IFS 3.18% CYP76 3.15%
Other Families 60.3%
More Families (96)
F3H 90 2.92% 7DLGT 86 2.79% T3O 85 2.76% UFGT 67 2.17% NMT 60 1.95% CAD 58 1.88% STR 57 1.85% SMT1/SMT2/SMT3 55 1.78% G8O/G8H 50 1.62% CAS 50 1.62% CODM/T6ODM 49 1.59% DWF4/CYP90B1 46 1.49% H6H 44 1.43% CSE 44 1.43% COMT 42 1.36% BR6OX2/CYP85A2 41 1.33% CYP71 40 1.3% 16OMT 35 1.14% TPS 34 1.1% F3'H/CYP75B 33 1.07% PYKS 32 1.04% TRI/TRII 32 1.04% T16H 32 1.04% IFR 32 1.04% LAC 31 1.01% GES 30 0.97% GS 28 0.91% SGD 27 0.88% FNS 27 0.88% ANR 27 0.88% RAS 27 0.88% HCT 26 0.84% COR 25 0.81% PMT 19 0.62% NCS 18 0.58% F5H/CYP84A 18 0.58% CYP90D1 18 0.58% 8HGO 17 0.55% F3'5'H/CYP75A 17 0.55% CPD/CYP90A1 17 0.55% CCR 16 0.52% IO 13 0.42% ANS/LDOX 11 0.36% TAT 11 0.36% BBE 10 0.32% CHS 10 0.32% DFR 10 0.32% GGPPS 10 0.32% LAMT 9 0.29% CNMT 9 0.29% CHI 9 0.29% PAL 9 0.29% CYP51G1 9 0.29% BR6OX1/CYP85A1 9 0.29% FPPS 9 0.29% 7DLH 8 0.26% AACT 8 0.26% CYP80B1 7 0.23% SLS 7 0.23% CCoAOMT 7 0.23% HPPR 7 0.23% CYP719 6 0.19% CPR 6 0.19% DET2 6 0.19% ROT3/CYP90C1 6 0.19% TYDC_DDC 5 0.16% SQS/FDFT1 5 0.16% MPO 4 0.13% HMGR 4 0.13% CMK/IspE 4 0.13% MVD 4 0.13% PMK 4 0.13% MVK 4 0.13% ISY 3 0.1% SMO1/SMO2 3 0.1% DWF1 3 0.1% TDC 2 0.06% FLS 2 0.06% HYD1 2 0.06% DXR 2 0.06% IDI 2 0.06% HDR/IspH 2 0.06% DXS 2 0.06% MCT/IspD 2 0.06% XMT_MXMT_DXMT 1 0.03% 6OMT_4OMT_SOMT 1 0.03% ADC 1 0.03% DWF5 1 0.03% FK 1 0.03% CPI1 1 0.03% SQE 1 0.03% DWF7 1 0.03% HMGS 1 0.03% GPPS 1 0.03% MDS/IspF 1 0.03% HDS/IspG 1 0.03%
Species Pathway Results
The links below show identification results for this species within each pathway, instead of opening the global pathway overview.
Pathway Candidate Genes Families Top family Results
Phenylpropanoid pathway 364 12 POD (188) View species results
Terpenoid pathway 362 21 BAHD (148) View species results
Alkaloid pathway 253 24 NMT (33) View species results
Flavonoid pathway 127 11 UFGT (49) View species results
Steroid pathway 91 12 CAS (42) View species results
Rosmarinic acid pathway 90 7 4CL (32) View species results
Broad Catalytic Groups
P450/oxygenase and BAHD/acyltransferase are counted separately as broad catalytic groups and are not mixed into the canonical enzyme-family count.
Catalytic group Families Candidate genes Included families
P450/oxygenase 23 1019 7DLH, BR6OX1/CYP85A1, BR6OX2/CYP85A2, C3'H/CYP98A, C4H, CPD/CYP90A1, CYP51G1, CYP71, CYP719, CYP76, CYP80B1, CYP90D1, DWF4/CYP90B1, F3'5'H/CYP75A, F3'H/CYP75B, F5H/CYP84A, G8O/G8H, IFS, IO, ROT3/CYP90C1, SLS, T16H, T3O
BAHD/acyltransferase 3 252 BAHD, HCT, RAS
Identification Result List
Search the public identification results for this species; click pathway or family legends above to narrow within this species.
Current family filter: NMT
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Gene Pathway Family Confidence Status Best Target
Csco27g01220.1 Alkaloid NMT low borderline NMT__00028__sp_Q2LAE1_ASHH2_ARATH
Csco27g01870.1 Alkaloid NMT medium pass NMT__00040__sp_Q84WW6_ASHH1_ARATH
Csco27g04450.1 Alkaloid NMT medium borderline NMT__00036__sp_Q6K9X3_NAMT1_ORYSJ
Csco27g04460.1 Alkaloid NMT medium borderline NMT__00036__sp_Q6K9X3_NAMT1_ORYSJ
Csco27g04700.1 Alkaloid NMT low borderline NMT__00056__sp_Q9FNE9_ATXR6_ARATH
Csco27g05210.1 Alkaloid NMT low borderline NMT__00016__sp_F4JNX3_CMKMT_ARATH
Csco28g00190.1 Alkaloid NMT medium pass NMT__00039__sp_Q84W92_ANM13_ARATH
Csco28g01570.1 Alkaloid NMT medium pass NMT__00027__sp_Q10MI4_EZ1_ORYSJ
Csco30g01930.1 Alkaloid NMT medium borderline NMT__00023__sp_O82210_ANM12_ARATH
Csco30g02500.1 Alkaloid NMT medium pass NMT__00035__sp_Q6K431_TRX1_ORYSJ