PlantSME Plant secondary metabolism enzyme database

Carex scoparia (carex_scoparia)

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Imported from atlas release summary for Carex scoparia.

1287
Candidate Genes
104
Families
6
Pathways
Phylogenetic Position
The current species is positioned within the lineage framework used by this site. Its taxon group is highlighted below.
Species Metadata
Taxon group
Monocots
Common name
/
Genome status
Genome-level resource available
Site Placement
  • This page summarizes pathway coverage, family distributions, and the gene list for the species within the current public dataset.
  • If you want to start from the public overview first, open the homepage and then return here for species-level drill-down.
  • Family statistics correspond to enzyme families, while pathway statistics correspond to the real category-level pathways.
Family Distribution
More Families (96)
Species Pathway Results
The links below show identification results for this species within each pathway, instead of opening the global pathway overview.
Pathway Candidate Genes Families Top family Results
Phenylpropanoid pathway 364 12 POD (188) View species results
Terpenoid pathway 362 21 BAHD (148) View species results
Alkaloid pathway 253 24 NMT (33) View species results
Flavonoid pathway 127 11 UFGT (49) View species results
Steroid pathway 91 12 CAS (42) View species results
Rosmarinic acid pathway 90 7 4CL (32) View species results
Broad Catalytic Groups
P450/oxygenase and BAHD/acyltransferase are counted separately as broad catalytic groups and are not mixed into the canonical enzyme-family count.
Catalytic group Families Candidate genes Included families
P450/oxygenase 23 1019 7DLH, BR6OX1/CYP85A1, BR6OX2/CYP85A2, C3'H/CYP98A, C4H, CPD/CYP90A1, CYP51G1, CYP71, CYP719, CYP76, CYP80B1, CYP90D1, DWF4/CYP90B1, F3'5'H/CYP75A, F3'H/CYP75B, F5H/CYP84A, G8O/G8H, IFS, IO, ROT3/CYP90C1, SLS, T16H, T3O
BAHD/acyltransferase 3 252 BAHD, HCT, RAS
Identification Result List
Search the public identification results for this species; click pathway or family legends above to narrow within this species.
Current pathway filter: Steroid pathway
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Gene Pathway Family Confidence Status
Csco01g02280.1 Steroid BR6OX1/CYP85A1 medium borderline
Csco02g03470.1 Steroid BR6OX1/CYP85A1 medium borderline
Csco02g08560.1 Steroid BR6OX1/CYP85A1 medium borderline
Csco14g06680.1 Steroid BR6OX1/CYP85A1 medium borderline
Csco15g02200.1 Steroid BR6OX1/CYP85A1 medium borderline
Csco17g07640.1 Steroid BR6OX1/CYP85A1 low borderline
Csco19g01060.1 Steroid BR6OX1/CYP85A1 medium borderline
Csco19g07220.1 Steroid BR6OX1/CYP85A1 low borderline
Csco20g00350.1 Steroid BR6OX1/CYP85A1 low borderline
Csco01g03810.1 Steroid BR6OX2/CYP85A2 low borderline
Csco01g09060.1 Steroid BR6OX2/CYP85A2 low borderline
Csco02g00200.1 Steroid BR6OX2/CYP85A2 low borderline
Csco02g01190.1 Steroid BR6OX2/CYP85A2 low borderline
Csco02g01520.1 Steroid BR6OX2/CYP85A2 low borderline
Csco02g02080.1 Steroid BR6OX2/CYP85A2 low borderline
Csco02g03910.1 Steroid BR6OX2/CYP85A2 low borderline
Csco04g08190.1 Steroid BR6OX2/CYP85A2 low borderline
Csco05g05170.1 Steroid BR6OX2/CYP85A2 low borderline
Csco05g08780.1 Steroid BR6OX2/CYP85A2 low borderline
Csco06g06850.1 Steroid BR6OX2/CYP85A2 low borderline
Csco06g08790.1 Steroid BR6OX2/CYP85A2 low borderline
Csco09g05710.1 Steroid BR6OX2/CYP85A2 low borderline
Csco10g07930.1 Steroid BR6OX2/CYP85A2 low borderline
Csco11g06410.1 Steroid BR6OX2/CYP85A2 low borderline
Csco11g07350.1 Steroid BR6OX2/CYP85A2 low borderline
Csco12g06440.1 Steroid BR6OX2/CYP85A2 low borderline
Csco13g00700.1 Steroid BR6OX2/CYP85A2 low borderline
Csco13g00710.1 Steroid BR6OX2/CYP85A2 low borderline
Csco13g01970.1 Steroid BR6OX2/CYP85A2 low borderline
Csco13g02640.1 Steroid BR6OX2/CYP85A2 low borderline
Csco13g03830.1 Steroid BR6OX2/CYP85A2 low borderline
Csco13g03880.1 Steroid BR6OX2/CYP85A2 low borderline
Csco15g02210.1 Steroid BR6OX2/CYP85A2 low borderline
Csco15g02850.1 Steroid BR6OX2/CYP85A2 low borderline
Csco15g02970.1 Steroid BR6OX2/CYP85A2 low borderline
Csco15g07340.1 Steroid BR6OX2/CYP85A2 low borderline
Csco16g01840.1 Steroid BR6OX2/CYP85A2 low borderline
Csco16g05620.1 Steroid BR6OX2/CYP85A2 low borderline
Csco19g06200.1 Steroid BR6OX2/CYP85A2 low borderline
Csco19g06240.1 Steroid BR6OX2/CYP85A2 low borderline
Csco20g06050.1 Steroid BR6OX2/CYP85A2 low borderline
Csco22g02180.1 Steroid BR6OX2/CYP85A2 low borderline
Csco22g05150.1 Steroid BR6OX2/CYP85A2 low borderline
Csco22g05170.1 Steroid BR6OX2/CYP85A2 low borderline
Csco24g02680.1 Steroid BR6OX2/CYP85A2 low borderline
Csco24g02690.1 Steroid BR6OX2/CYP85A2 low borderline
Csco26g01830.1 Steroid BR6OX2/CYP85A2 low borderline
Csco26g01850.1 Steroid BR6OX2/CYP85A2 low borderline
Csco27g05280.1 Steroid BR6OX2/CYP85A2 low borderline
Csco33g02220.1 Steroid BR6OX2/CYP85A2 low borderline