PlantSME Plant secondary metabolism enzyme database

Carex scoparia (carex_scoparia)

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Imported from atlas release summary for Carex scoparia.

1287
Candidate Genes
104
Families
6
Pathways
Phylogenetic Position
The current species is positioned within the lineage framework used by this site. Its taxon group is highlighted below.
Species Metadata
Taxon group
Monocots
Common name
/
Genome status
Genome-level resource available
Site Placement
  • This page summarizes pathway coverage, family distributions, and the gene list for the species within the current public dataset.
  • If you want to start from the public overview first, open the homepage and then return here for species-level drill-down.
  • Family statistics correspond to enzyme families, while pathway statistics correspond to the real category-level pathways.
Family Distribution
More Families (96)
Species Pathway Results
The links below show identification results for this species within each pathway, instead of opening the global pathway overview.
Pathway Candidate Genes Families Top family Results
Phenylpropanoid pathway 364 12 POD (188) View species results
Terpenoid pathway 362 21 BAHD (148) View species results
Alkaloid pathway 253 24 NMT (33) View species results
Flavonoid pathway 127 11 UFGT (49) View species results
Steroid pathway 91 12 CAS (42) View species results
Rosmarinic acid pathway 90 7 4CL (32) View species results
Broad Catalytic Groups
P450/oxygenase and BAHD/acyltransferase are counted separately as broad catalytic groups and are not mixed into the canonical enzyme-family count.
Catalytic group Families Candidate genes Included families
P450/oxygenase 23 1019 7DLH, BR6OX1/CYP85A1, BR6OX2/CYP85A2, C3'H/CYP98A, C4H, CPD/CYP90A1, CYP51G1, CYP71, CYP719, CYP76, CYP80B1, CYP90D1, DWF4/CYP90B1, F3'5'H/CYP75A, F3'H/CYP75B, F5H/CYP84A, G8O/G8H, IFS, IO, ROT3/CYP90C1, SLS, T16H, T3O
BAHD/acyltransferase 3 252 BAHD, HCT, RAS
Identification Result List
Search the public identification results for this species; click pathway or family legends above to narrow within this species.
Current pathway filter: Rosmarinic acid pathway
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Gene Pathway Family Confidence Status
Csco01g07530.1 Rosmarinic Acid C4H medium pass
Csco01g07960.1 Rosmarinic Acid C4H low borderline
Csco01g09060.1 Rosmarinic Acid C4H medium pass
Csco01g09100.1 Rosmarinic Acid C4H low borderline
Csco01g09120.1 Rosmarinic Acid C4H low borderline
Csco02g00170.1 Rosmarinic Acid C4H low borderline
Csco02g00190.1 Rosmarinic Acid C4H low borderline
Csco02g01190.1 Rosmarinic Acid C4H low borderline
Csco02g01410.1 Rosmarinic Acid C4H low borderline
Csco02g01450.1 Rosmarinic Acid C4H low borderline
Csco02g01510.1 Rosmarinic Acid C4H low borderline
Csco02g01520.1 Rosmarinic Acid C4H low borderline
Csco02g01530.1 Rosmarinic Acid C4H low borderline
Csco02g01540.1 Rosmarinic Acid C4H low borderline
Csco02g01630.1 Rosmarinic Acid C4H low borderline
Csco02g02050.1 Rosmarinic Acid C4H low borderline
Csco02g02080.1 Rosmarinic Acid C4H low borderline
Csco02g02090.1 Rosmarinic Acid C4H low borderline
Csco02g03910.1 Rosmarinic Acid C4H low borderline
Csco02g04400.1 Rosmarinic Acid C4H low borderline
Csco02g05460.1 Rosmarinic Acid C4H low borderline
Csco02g08560.1 Rosmarinic Acid C4H low borderline
Csco03g01140.1 Rosmarinic Acid C4H low borderline
Csco03g01610.1 Rosmarinic Acid C4H low borderline
Csco03g01630.1 Rosmarinic Acid C4H low borderline
Csco03g01650.1 Rosmarinic Acid C4H low borderline
Csco03g01670.1 Rosmarinic Acid C4H low borderline
Csco03g01680.1 Rosmarinic Acid C4H low borderline
Csco04g03880.1 Rosmarinic Acid C4H medium pass
Csco04g05300.1 Rosmarinic Acid C4H low borderline
Csco05g05170.1 Rosmarinic Acid C4H low borderline
Csco05g05200.1 Rosmarinic Acid C4H low borderline
Csco05g06230.1 Rosmarinic Acid C4H low borderline
Csco05g08750.1 Rosmarinic Acid C4H low borderline
Csco05g08760.1 Rosmarinic Acid C4H low borderline
Csco05g08780.1 Rosmarinic Acid C4H medium pass
Csco05g10130.1 Rosmarinic Acid C4H low borderline
Csco06g03000.1 Rosmarinic Acid C4H low borderline
Csco06g03730.1 Rosmarinic Acid C4H low borderline
Csco06g06850.1 Rosmarinic Acid C4H medium pass
Csco06g08060.1 Rosmarinic Acid C4H low borderline
Csco06g08790.1 Rosmarinic Acid C4H low borderline
Csco07g10730.1 Rosmarinic Acid C4H low borderline
Csco08g00370.1 Rosmarinic Acid C4H low borderline
Csco08g05310.1 Rosmarinic Acid C4H low borderline
Csco08g08400.1 Rosmarinic Acid C4H low borderline
Csco09g05310.1 Rosmarinic Acid C4H low borderline
Csco09g05660.1 Rosmarinic Acid C4H low borderline
Csco09g05680.1 Rosmarinic Acid C4H low borderline
Csco09g05710.1 Rosmarinic Acid C4H medium pass