PlantSME Plant secondary metabolism enzyme database

Carex scoparia (carex_scoparia)

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Imported from atlas release summary for Carex scoparia.

1287
Candidate Genes
104
Families
6
Pathways
Phylogenetic Position
The current species is positioned within the lineage framework used by this site. Its taxon group is highlighted below.
Species Metadata
Taxon group
Monocots
Common name
/
Genome status
Genome-level resource available
Site Placement
  • This page summarizes pathway coverage, family distributions, and the gene list for the species within the current public dataset.
  • If you want to start from the public overview first, open the homepage and then return here for species-level drill-down.
  • Family statistics correspond to enzyme families, while pathway statistics correspond to the real category-level pathways.
Family Distribution
More Families (96)
Species Pathway Results
The links below show identification results for this species within each pathway, instead of opening the global pathway overview.
Pathway Candidate Genes Families Top family Results
Phenylpropanoid pathway 364 12 POD (188) View species results
Terpenoid pathway 362 21 BAHD (148) View species results
Alkaloid pathway 253 24 NMT (33) View species results
Flavonoid pathway 127 11 UFGT (49) View species results
Steroid pathway 91 12 CAS (42) View species results
Rosmarinic acid pathway 90 7 4CL (32) View species results
Broad Catalytic Groups
P450/oxygenase and BAHD/acyltransferase are counted separately as broad catalytic groups and are not mixed into the canonical enzyme-family count.
Catalytic group Families Candidate genes Included families
P450/oxygenase 23 1019 7DLH, BR6OX1/CYP85A1, BR6OX2/CYP85A2, C3'H/CYP98A, C4H, CPD/CYP90A1, CYP51G1, CYP71, CYP719, CYP76, CYP80B1, CYP90D1, DWF4/CYP90B1, F3'5'H/CYP75A, F3'H/CYP75B, F5H/CYP84A, G8O/G8H, IFS, IO, ROT3/CYP90C1, SLS, T16H, T3O
BAHD/acyltransferase 3 252 BAHD, HCT, RAS
Identification Result List
Search the public identification results for this species; click pathway or family legends above to narrow within this species.
Gene Pathway Family Confidence Status
Csco04g06940.1 Alkaloid BBE medium borderline
Csco05g10530.1 Alkaloid BBE medium borderline
Csco05g10540.1 Alkaloid BBE medium borderline
Csco05g10550.1 Alkaloid BBE medium borderline
Csco09g06830.1 Alkaloid BBE medium borderline
Csco18g02710.1 Alkaloid BBE medium borderline
Csco31g00760.1 Alkaloid BBE medium borderline
Csco31g00780.1 Alkaloid BBE medium borderline
Csco03g08870.1 Alkaloid CNMT medium pass
Csco06g06410.1 Alkaloid CNMT low borderline
Csco08g04040.1 Alkaloid CNMT low borderline
Csco17g05840.1 Alkaloid CNMT low borderline
Csco17g06770.1 Alkaloid CNMT low borderline
Csco20g00590.1 Alkaloid CNMT medium borderline
Csco20g01250.1 Alkaloid CNMT low borderline
Csco21g06440.1 Alkaloid CNMT low borderline
Csco24g00920.1 Alkaloid CNMT low borderline
Csco01g09070.1 Alkaloid CODM/T6ODM medium borderline
Csco01g11080.1 Alkaloid CODM/T6ODM medium borderline
Csco01g11090.1 Alkaloid CODM/T6ODM medium borderline
Csco02g00110.1 Alkaloid CODM/T6ODM medium borderline
Csco03g06010.1 Alkaloid CODM/T6ODM medium borderline
Csco04g01310.1 Alkaloid CODM/T6ODM medium borderline
Csco05g10380.1 Alkaloid CODM/T6ODM medium borderline
Csco05g10390.1 Alkaloid CODM/T6ODM medium borderline
Csco06g07680.1 Alkaloid CODM/T6ODM medium borderline
Csco07g00360.1 Alkaloid CODM/T6ODM medium borderline
Csco07g03690.1 Alkaloid CODM/T6ODM medium borderline
Csco07g04650.1 Alkaloid CODM/T6ODM medium borderline
Csco07g06460.1 Alkaloid CODM/T6ODM medium borderline
Csco07g06510.1 Alkaloid CODM/T6ODM medium borderline
Csco08g01650.1 Alkaloid CODM/T6ODM medium borderline
Csco09g07020.1 Alkaloid CODM/T6ODM medium borderline
Csco10g01430.1 Alkaloid CODM/T6ODM medium borderline
Csco10g01710.1 Alkaloid CODM/T6ODM medium borderline
Csco10g05950.1 Alkaloid CODM/T6ODM medium borderline
Csco10g07040.1 Alkaloid CODM/T6ODM medium borderline
Csco11g00760.1 Alkaloid CODM/T6ODM medium borderline
Csco11g00930.1 Alkaloid CODM/T6ODM medium borderline
Csco11g00960.1 Alkaloid CODM/T6ODM medium borderline
Csco11g01000.1 Alkaloid CODM/T6ODM medium borderline
Csco11g01010.1 Alkaloid CODM/T6ODM medium borderline
Csco12g02620.1 Alkaloid CODM/T6ODM medium borderline
Csco12g05360.1 Alkaloid CODM/T6ODM medium borderline
Csco15g00330.1 Alkaloid CODM/T6ODM medium borderline
Csco15g08450.1 Alkaloid CODM/T6ODM medium borderline
Csco17g01570.1 Alkaloid CODM/T6ODM medium borderline
Csco17g06820.1 Alkaloid CODM/T6ODM medium borderline
Csco18g00730.1 Alkaloid CODM/T6ODM medium borderline
Csco19g02290.1 Alkaloid CODM/T6ODM medium borderline