PlantSME Plant secondary metabolism enzyme database

Carex scoparia (carex_scoparia)

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Imported from atlas release summary for Carex scoparia.

1287
Candidate Genes
104
Families
6
Pathways
Phylogenetic Position
The current species is positioned within the lineage framework used by this site. Its taxon group is highlighted below.
Species Metadata
Taxon group
Monocots
Common name
/
Genome status
Genome-level resource available
Site Placement
  • This page summarizes pathway coverage, family distributions, and the gene list for the species within the current public dataset.
  • If you want to start from the public overview first, open the homepage and then return here for species-level drill-down.
  • Family statistics correspond to enzyme families, while pathway statistics correspond to the real category-level pathways.
Family Distribution
More Families (96)
Species Pathway Results
The links below show identification results for this species within each pathway, instead of opening the global pathway overview.
Pathway Candidate Genes Families Top family Results
Phenylpropanoid pathway 364 12 POD (188) View species results
Terpenoid pathway 362 21 BAHD (148) View species results
Alkaloid pathway 253 24 NMT (33) View species results
Flavonoid pathway 127 11 UFGT (49) View species results
Steroid pathway 91 12 CAS (42) View species results
Rosmarinic acid pathway 90 7 4CL (32) View species results
Broad Catalytic Groups
P450/oxygenase and BAHD/acyltransferase are counted separately as broad catalytic groups and are not mixed into the canonical enzyme-family count.
Catalytic group Families Candidate genes Included families
P450/oxygenase 23 1019 7DLH, BR6OX1/CYP85A1, BR6OX2/CYP85A2, C3'H/CYP98A, C4H, CPD/CYP90A1, CYP51G1, CYP71, CYP719, CYP76, CYP80B1, CYP90D1, DWF4/CYP90B1, F3'5'H/CYP75A, F3'H/CYP75B, F5H/CYP84A, G8O/G8H, IFS, IO, ROT3/CYP90C1, SLS, T16H, T3O
BAHD/acyltransferase 3 252 BAHD, HCT, RAS
Identification Result List
Search the public identification results for this species; click pathway or family legends above to narrow within this species.
Current pathway filter: Rosmarinic acid pathway
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Gene Pathway Family Confidence Status
Csco15g08180.1 Rosmarinic Acid C4H low borderline
Csco16g01830.1 Rosmarinic Acid C4H low borderline
Csco16g05620.1 Rosmarinic Acid C4H medium pass
Csco16g05630.1 Rosmarinic Acid C4H medium pass
Csco17g01290.1 Rosmarinic Acid C4H low borderline
Csco17g07640.1 Rosmarinic Acid C4H low borderline
Csco18g01140.1 Rosmarinic Acid C4H low borderline
Csco18g01420.1 Rosmarinic Acid C4H low borderline
Csco18g02090.1 Rosmarinic Acid C4H low borderline
Csco18g03760.1 Rosmarinic Acid C4H low borderline
Csco19g01060.1 Rosmarinic Acid C4H low borderline
Csco19g04080.1 Rosmarinic Acid C4H low borderline
Csco19g04430.1 Rosmarinic Acid C4H low borderline
Csco19g06200.1 Rosmarinic Acid C4H low borderline
Csco19g06240.1 Rosmarinic Acid C4H low borderline
Csco20g00170.1 Rosmarinic Acid C4H low borderline
Csco20g00190.1 Rosmarinic Acid C4H low borderline
Csco20g00350.1 Rosmarinic Acid C4H low borderline
Csco20g00480.1 Rosmarinic Acid C4H low borderline
Csco20g05680.1 Rosmarinic Acid C4H medium pass
Csco20g06050.1 Rosmarinic Acid C4H low borderline
Csco21g05000.1 Rosmarinic Acid C4H low borderline
Csco22g02180.1 Rosmarinic Acid C4H medium pass
Csco22g05120.1 Rosmarinic Acid C4H low borderline
Csco22g05130.1 Rosmarinic Acid C4H low borderline
Csco22g05140.1 Rosmarinic Acid C4H low borderline
Csco22g05150.1 Rosmarinic Acid C4H low borderline
Csco22g05160.1 Rosmarinic Acid C4H low borderline
Csco22g05170.1 Rosmarinic Acid C4H low borderline
Csco22g05180.1 Rosmarinic Acid C4H low borderline
Csco24g00540.1 Rosmarinic Acid C4H low borderline
Csco24g01660.1 Rosmarinic Acid C4H medium pass
Csco24g01670.1 Rosmarinic Acid C4H low borderline
Csco24g02130.1 Rosmarinic Acid C4H low borderline
Csco24g02400.1 Rosmarinic Acid C4H low borderline
Csco24g03080.1 Rosmarinic Acid C4H low borderline
Csco24g05530.1 Rosmarinic Acid C4H low borderline
Csco24g05540.1 Rosmarinic Acid C4H low borderline
Csco25g03920.1 Rosmarinic Acid C4H low borderline
Csco25g04620.1 Rosmarinic Acid C4H low borderline
Csco26g01830.1 Rosmarinic Acid C4H low borderline
Csco26g01850.1 Rosmarinic Acid C4H low borderline
Csco26g02400.1 Rosmarinic Acid C4H low borderline
Csco27g04340.1 Rosmarinic Acid C4H low borderline
Csco27g05310.1 Rosmarinic Acid C4H low borderline
Csco28g00630.1 Rosmarinic Acid C4H low borderline
Csco29g04380.1 Rosmarinic Acid C4H low borderline
Csco32g03070.1 Rosmarinic Acid C4H low borderline
Csco32g03760.1 Rosmarinic Acid C4H low borderline
Csco33g02220.1 Rosmarinic Acid C4H low borderline