PlantSME Plant secondary metabolism enzyme database

Carex scoparia (carex_scoparia)

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Imported from atlas release summary for Carex scoparia.

1287
Candidate Genes
104
Families
6
Pathways
Phylogenetic Position
The current species is positioned within the lineage framework used by this site. Its taxon group is highlighted below.
Species Metadata
Taxon group
Monocots
Common name
/
Genome status
Genome-level resource available
Site Placement
  • This page summarizes pathway coverage, family distributions, and the gene list for the species within the current public dataset.
  • If you want to start from the public overview first, open the homepage and then return here for species-level drill-down.
  • Family statistics correspond to enzyme families, while pathway statistics correspond to the real category-level pathways.
Family Distribution
More Families (96)
Species Pathway Results
The links below show identification results for this species within each pathway, instead of opening the global pathway overview.
Pathway Candidate Genes Families Top family Results
Phenylpropanoid pathway 364 12 POD (188) View species results
Terpenoid pathway 362 21 BAHD (148) View species results
Alkaloid pathway 253 24 NMT (33) View species results
Flavonoid pathway 127 11 UFGT (49) View species results
Steroid pathway 91 12 CAS (42) View species results
Rosmarinic acid pathway 90 7 4CL (32) View species results
Broad Catalytic Groups
P450/oxygenase and BAHD/acyltransferase are counted separately as broad catalytic groups and are not mixed into the canonical enzyme-family count.
Catalytic group Families Candidate genes Included families
P450/oxygenase 23 1019 7DLH, BR6OX1/CYP85A1, BR6OX2/CYP85A2, C3'H/CYP98A, C4H, CPD/CYP90A1, CYP51G1, CYP71, CYP719, CYP76, CYP80B1, CYP90D1, DWF4/CYP90B1, F3'5'H/CYP75A, F3'H/CYP75B, F5H/CYP84A, G8O/G8H, IFS, IO, ROT3/CYP90C1, SLS, T16H, T3O
BAHD/acyltransferase 3 252 BAHD, HCT, RAS
Identification Result List
Search the public identification results for this species; click pathway or family legends above to narrow within this species.
Current pathway filter: Phenylpropanoid pathway
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Gene Pathway Family Confidence Status
Csco09g05660.1 Phenylpropanoid C4H/CYP73A low borderline
Csco09g05680.1 Phenylpropanoid C4H/CYP73A low borderline
Csco10g04680.1 Phenylpropanoid C4H/CYP73A low borderline
Csco10g04690.1 Phenylpropanoid C4H/CYP73A low borderline
Csco10g05820.1 Phenylpropanoid C4H/CYP73A medium borderline
Csco11g05630.1 Phenylpropanoid C4H/CYP73A low borderline
Csco11g06950.1 Phenylpropanoid C4H/CYP73A low borderline
Csco13g03410.1 Phenylpropanoid C4H/CYP73A low borderline
Csco13g03900.1 Phenylpropanoid C4H/CYP73A low borderline
Csco14g02840.1 Phenylpropanoid C4H/CYP73A low borderline
Csco14g02920.1 Phenylpropanoid C4H/CYP73A low borderline
Csco14g02980.1 Phenylpropanoid C4H/CYP73A low borderline
Csco15g00910.1 Phenylpropanoid C4H/CYP73A low borderline
Csco15g03130.1 Phenylpropanoid C4H/CYP73A low borderline
Csco19g04080.1 Phenylpropanoid C4H/CYP73A low borderline
Csco20g00170.1 Phenylpropanoid C4H/CYP73A medium borderline
Csco21g05000.1 Phenylpropanoid C4H/CYP73A low borderline
Csco22g05180.1 Phenylpropanoid C4H/CYP73A low borderline
Csco24g01670.1 Phenylpropanoid C4H/CYP73A low borderline
Csco24g02400.1 Phenylpropanoid C4H/CYP73A low borderline
Csco24g05530.1 Phenylpropanoid C4H/CYP73A low borderline
Csco26g02400.1 Phenylpropanoid C4H/CYP73A low borderline
Csco28g00630.1 Phenylpropanoid C4H/CYP73A low borderline
Csco01g00140.1 Phenylpropanoid CAD medium pass
Csco01g05700.1 Phenylpropanoid CAD medium pass
Csco01g05810.1 Phenylpropanoid CAD medium pass
Csco02g01470.1 Phenylpropanoid CAD low borderline
Csco02g07600.1 Phenylpropanoid CAD medium borderline
Csco03g04720.1 Phenylpropanoid CAD medium borderline
Csco03g04860.1 Phenylpropanoid CAD low borderline
Csco03g07400.1 Phenylpropanoid CAD low borderline
Csco03g08690.1 Phenylpropanoid CAD low borderline
Csco04g05630.1 Phenylpropanoid CAD low borderline
Csco04g05640.1 Phenylpropanoid CAD low borderline
Csco04g05650.1 Phenylpropanoid CAD low borderline
Csco05g09220.1 Phenylpropanoid CAD medium borderline
Csco05g09230.1 Phenylpropanoid CAD medium borderline
Csco05g09240.1 Phenylpropanoid CAD medium borderline
Csco05g09250.1 Phenylpropanoid CAD medium borderline
Csco05g09260.1 Phenylpropanoid CAD medium borderline
Csco05g09270.1 Phenylpropanoid CAD medium borderline
Csco07g00640.1 Phenylpropanoid CAD medium borderline
Csco09g01010.1 Phenylpropanoid CAD medium borderline
Csco09g02520.1 Phenylpropanoid CAD medium borderline
Csco10g09100.1 Phenylpropanoid CAD low borderline
Csco10g09110.1 Phenylpropanoid CAD low borderline
Csco11g00520.1 Phenylpropanoid CAD medium pass
Csco11g00530.1 Phenylpropanoid CAD medium pass
Csco13g01120.1 Phenylpropanoid CAD low borderline
Csco13g01160.1 Phenylpropanoid CAD low borderline