PlantSME Plant secondary metabolism enzyme database

Citrus ichangensis (citrus_ichangensis)

Imported from atlas release summary for Citrus ichangensis.

1849
Candidate Genes
106
Families
6
Pathways
Phylogenetic Position
The current species is positioned within the lineage framework used by this site. Its taxon group is highlighted below.
Algae
Site group 29
Bryophytes
Site group 125
Lycophytes/Ferns
Site group 4
Gymnosperms
Site group 6
Basal angiosperms
Site group 13
Monocots
Site group 117
Eudicots
Current group 495
Species Metadata
Taxon group
Eudicots
Genome status
Genome-level resource available
Site Placement
  • This page summarizes pathway coverage, family distributions, and the gene list for the species within the current public dataset.
  • If you want to start from the public overview first, open the homepage and then return here for species-level drill-down.
  • Family statistics correspond to enzyme families, while pathway statistics correspond to the real category-level pathways.
Pathway Coverage
Terpenoid pathway 26.5% Alkaloid pathway 24.88% Phenylpropanoid pathway 22.17% Rosmarinic acid pathway 10.22% Flavonoid pathway 9.09% Steroid pathway 7.14%
Family Distribution
C4H 7.84% C3'H/CYP98A 6.41% CYP76 4.91% IFS 4.82% BAHD 4.42% T3O 3.56% 4CL 3.51% POD 3.2%
Other Families 61.33%
More Families (98)
F3H 169 3.09% NMT 165 3.01% UGT 157 2.87% BR6OX2/CYP85A2 136 2.48% DWF4/CYP90B1 129 2.36% F3'H/CYP75B 127 2.32% CODM/T6ODM 123 2.25% 7DLGT 90 1.64% STR 89 1.63% G8O/G8H 83 1.52% CYP71 80 1.46% TRI/TRII 75 1.37% T16H 73 1.33% BBE 73 1.33% H6H 71 1.3% IFR 68 1.24% UFGT 66 1.21% CYP90D1 63 1.15% COMT 62 1.13% CAS 62 1.13% SMT1/SMT2/SMT3 54 0.99% CAD 52 0.95% GS 50 0.91% PYKS 50 0.91% SGD 46 0.84% 16OMT 45 0.82% CSE 44 0.8% IO 43 0.79% F3'5'H/CYP75A 43 0.79% LAC 42 0.77% 7DLH 37 0.68% F5H/CYP84A 36 0.66% GGPPS 34 0.62% FNS 32 0.58% GES 30 0.55% COR 30 0.55% LAMT 30 0.55% ANR 30 0.55% CCoAOMT 30 0.55% CCR 29 0.53% TPS 29 0.53% CNMT 27 0.49% NCS 25 0.46% PAL 24 0.44% CPD/CYP90A1 24 0.44% ISY 23 0.42% CHS 23 0.42% TAT 23 0.42% CYP51G1 23 0.42% 8HGO 22 0.4% SLS 20 0.37% BR6OX1/CYP85A1 20 0.37% ANS/LDOX 19 0.35% CYP80B1 18 0.33% RAS 18 0.33% AACT 18 0.33% HCT 17 0.31% DFR 16 0.29% HPPR 14 0.26% ROT3/CYP90C1 14 0.26% MPO 13 0.24% SQE 12 0.22% CYP719 10 0.18% 6OMT_4OMT_SOMT 10 0.18% PMT 10 0.18% SQS/FDFT1 9 0.16% DXS 9 0.16% FPPS 9 0.16% CHI 8 0.15% MVK 8 0.15% HMGS 8 0.15% MCT/IspD 7 0.13% XMT_MXMT_DXMT 6 0.11% DXR 6 0.11% CPR 5 0.09% FK 5 0.09% DWF5 5 0.09% HYD1 5 0.09% ODC 4 0.07% DET2 4 0.07% SMO1/SMO2 4 0.07% HDR/IspH 4 0.07% HMGR 4 0.07% ADC 3 0.05% CPI1 3 0.05% MVD 3 0.05% PMK 3 0.05% TYDC_DDC 2 0.04% FLS 2 0.04% DWF7 2 0.04% CMK/IspE 2 0.04% CYP80F1 1 0.02% TDC 1 0.02% DWF1 1 0.02% IDI 1 0.02% MDS/IspF 1 0.02% GPPS 1 0.02% HDS/IspG 1 0.02%
Species Pathway Results
The links below show identification results for this species within each pathway, instead of opening the global pathway overview.
Pathway Candidate Genes Families Top family Results
Terpenoid pathway 490 19 BAHD (197) View species results
Alkaloid pathway 460 26 NMT (81) View species results
Phenylpropanoid pathway 410 12 POD (165) View species results
Rosmarinic acid pathway 189 7 C4H (105) View species results
Flavonoid pathway 168 13 UFGT (42) View species results
Steroid pathway 132 15 CAS (56) View species results
Broad Catalytic Groups
P450/oxygenase and BAHD/acyltransferase are counted separately as broad catalytic groups and are not mixed into the canonical enzyme-family count.
Catalytic group Families Candidate genes Included families
P450/oxygenase 24 2488 7DLH, BR6OX1/CYP85A1, BR6OX2/CYP85A2, C3'H/CYP98A, C4H, CPD/CYP90A1, CYP51G1, CYP71, CYP719, CYP76, CYP80B1, CYP80F1, CYP90D1, DWF4/CYP90B1, F3'5'H/CYP75A, F3'H/CYP75B, F5H/CYP84A, G8O/G8H, IFS, IO, ROT3/CYP90C1, SLS, T16H, T3O
BAHD/acyltransferase 3 277 BAHD, HCT, RAS
Identification Result List
Search the public identification results for this species; click pathway or family legends above to narrow within this species.
Current family filter: CHI
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Gene Pathway Family Confidence Status Best Target
Cichscaffold_16200060070.1 Flavonoid CHI medium pass CHI__00003__sp_O65333_CFI_ELAUM
Cichscaffold_400195630.1 Flavonoid CHI medium pass CHI__00001__sp_A0A2U7XUE3_CHIL2_HUMLU
Cichscaffold_400195630.2 Flavonoid CHI medium pass CHI__00001__sp_A0A2U7XUE3_CHIL2_HUMLU
Cichscaffold_540240280.1 Flavonoid CHI low borderline CHI__00002__sp_A0A2U7XUH7_CHIL1_HUMLU
Cichscaffold_540240280.2 Flavonoid CHI low borderline CHI__00002__sp_A0A2U7XUH7_CHIL1_HUMLU
Cichscaffold_540240280.3 Flavonoid CHI low borderline CHI__00002__sp_A0A2U7XUH7_CHIL1_HUMLU
Cichscaffold_7330282440.1 Flavonoid CHI medium pass CHI__00002__sp_A0A2U7XUH7_CHIL1_HUMLU
Cichscaffold_980319460.1 Flavonoid CHI low borderline CHI__00003__sp_O65333_CFI_ELAUM