PlantSME Plant secondary metabolism enzyme database

Citrus ichangensis (citrus_ichangensis)

Imported from atlas release summary for Citrus ichangensis.

1849
Candidate Genes
106
Families
6
Pathways
Phylogenetic Position
The current species is positioned within the lineage framework used by this site. Its taxon group is highlighted below.
Species Metadata
Taxon group
Eudicots
Genome status
Genome-level resource available
Site Placement
  • This page summarizes pathway coverage, family distributions, and the gene list for the species within the current public dataset.
  • If you want to start from the public overview first, open the homepage and then return here for species-level drill-down.
  • Family statistics correspond to enzyme families, while pathway statistics correspond to the real category-level pathways.
Family Distribution
More Families (98)
Species Pathway Results
The links below show identification results for this species within each pathway, instead of opening the global pathway overview.
Pathway Candidate Genes Families Top family Results
Terpenoid pathway 490 19 BAHD (197) View species results
Alkaloid pathway 460 26 NMT (81) View species results
Phenylpropanoid pathway 410 12 POD (165) View species results
Rosmarinic acid pathway 189 7 C4H (105) View species results
Flavonoid pathway 168 13 UFGT (42) View species results
Steroid pathway 132 15 CAS (56) View species results
Broad Catalytic Groups
P450/oxygenase and BAHD/acyltransferase are counted separately as broad catalytic groups and are not mixed into the canonical enzyme-family count.
Catalytic group Families Candidate genes Included families
P450/oxygenase 24 2488 7DLH, BR6OX1/CYP85A1, BR6OX2/CYP85A2, C3'H/CYP98A, C4H, CPD/CYP90A1, CYP51G1, CYP71, CYP719, CYP76, CYP80B1, CYP80F1, CYP90D1, DWF4/CYP90B1, F3'5'H/CYP75A, F3'H/CYP75B, F5H/CYP84A, G8O/G8H, IFS, IO, ROT3/CYP90C1, SLS, T16H, T3O
BAHD/acyltransferase 3 277 BAHD, HCT, RAS
Identification Result List
Search the public identification results for this species; click pathway or family legends above to narrow within this species.
Current family filter: T3O
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Gene Pathway Family Confidence Status
Cichscaffold_1000002330.1 Alkaloid T3O medium borderline
Cichscaffold_1000002420.1 Alkaloid T3O medium borderline
Cichscaffold_1000002430.1 Alkaloid T3O medium borderline
Cichscaffold_1000002490.1 Alkaloid T3O medium borderline
Cichscaffold_1030005470.1 Alkaloid T3O medium borderline
Cichscaffold_1030005490.1 Alkaloid T3O medium pass
Cichscaffold_10320005970.1 Alkaloid T3O medium borderline
Cichscaffold_10390006190.1 Alkaloid T3O medium borderline
Cichscaffold_1050007950.1 Alkaloid T3O medium pass
Cichscaffold_10530008490.1 Alkaloid T3O medium pass
Cichscaffold_1090011350.1 Alkaloid T3O low borderline
Cichscaffold_10950011420.1 Alkaloid T3O medium borderline
Cichscaffold_10950011430.1 Alkaloid T3O medium borderline
Cichscaffold_1130014440.1 Alkaloid T3O medium borderline
Cichscaffold_1130014450.1 Alkaloid T3O medium borderline
Cichscaffold_1130014470.1 Alkaloid T3O medium borderline
Cichscaffold_1130014480.1 Alkaloid T3O medium borderline
Cichscaffold_1130014490.1 Alkaloid T3O medium borderline
Cichscaffold_1130014500.1 Alkaloid T3O medium borderline
Cichscaffold_11630016980.1 Alkaloid T3O medium borderline
Cichscaffold_1170017230.1 Alkaloid T3O medium borderline
Cichscaffold_1170017250.1 Alkaloid T3O medium borderline
Cichscaffold_1170017260.1 Alkaloid T3O medium borderline
Cichscaffold_11900019240.1 Alkaloid T3O medium pass
Cichscaffold_1280029630.1 Alkaloid T3O medium borderline
Cichscaffold_1350036800.1 Alkaloid T3O medium pass
Cichscaffold_13790038400.1 Alkaloid T3O medium borderline
Cichscaffold_13790038420.1 Alkaloid T3O medium borderline
Cichscaffold_1430042030.1 Alkaloid T3O medium borderline
Cichscaffold_1430042050.1 Alkaloid T3O medium borderline
Cichscaffold_1430042100.1 Alkaloid T3O medium borderline
Cichscaffold_1470045250.1 Alkaloid T3O medium borderline
Cichscaffold_1480045730.1 Alkaloid T3O medium borderline
Cichscaffold_1480046160.1 Alkaloid T3O medium pass
Cichscaffold_1480046190.1 Alkaloid T3O medium pass
Cichscaffold_1480046290.1 Alkaloid T3O medium borderline
Cichscaffold_1480046310.1 Alkaloid T3O medium borderline
Cichscaffold_14_10047130.1 Alkaloid T3O medium borderline
Cichscaffold_14_10048080.1 Alkaloid T3O medium borderline
Cichscaffold_14_10048090.1 Alkaloid T3O medium borderline
Cichscaffold_14_20048290.1 Alkaloid T3O medium borderline
Cichscaffold_1510050160.1 Alkaloid T3O medium pass
Cichscaffold_1560053690.1 Alkaloid T3O medium borderline
Cichscaffold_1560053720.1 Alkaloid T3O medium borderline
Cichscaffold_160057560.1 Alkaloid T3O medium borderline
Cichscaffold_160058100.1 Alkaloid T3O medium pass
Cichscaffold_1670062460.1 Alkaloid T3O medium borderline
Cichscaffold_16750062560.1 Alkaloid T3O medium borderline
Cichscaffold_16760062590.1 Alkaloid T3O medium borderline
Cichscaffold_170064930.1 Alkaloid T3O medium borderline