PlantSME Plant secondary metabolism enzyme database

Citrus ichangensis (citrus_ichangensis)

Imported from atlas release summary for Citrus ichangensis.

1849
Candidate Genes
106
Families
6
Pathways
Phylogenetic Position
The current species is positioned within the lineage framework used by this site. Its taxon group is highlighted below.
Species Metadata
Taxon group
Eudicots
Genome status
Genome-level resource available
Site Placement
  • This page summarizes pathway coverage, family distributions, and the gene list for the species within the current public dataset.
  • If you want to start from the public overview first, open the homepage and then return here for species-level drill-down.
  • Family statistics correspond to enzyme families, while pathway statistics correspond to the real category-level pathways.
Family Distribution
More Families (98)
Species Pathway Results
The links below show identification results for this species within each pathway, instead of opening the global pathway overview.
Pathway Candidate Genes Families Top family Results
Terpenoid pathway 490 19 BAHD (197) View species results
Alkaloid pathway 460 26 NMT (81) View species results
Phenylpropanoid pathway 410 12 POD (165) View species results
Rosmarinic acid pathway 189 7 C4H (105) View species results
Flavonoid pathway 168 13 UFGT (42) View species results
Steroid pathway 132 15 CAS (56) View species results
Broad Catalytic Groups
P450/oxygenase and BAHD/acyltransferase are counted separately as broad catalytic groups and are not mixed into the canonical enzyme-family count.
Catalytic group Families Candidate genes Included families
P450/oxygenase 24 2488 7DLH, BR6OX1/CYP85A1, BR6OX2/CYP85A2, C3'H/CYP98A, C4H, CPD/CYP90A1, CYP51G1, CYP71, CYP719, CYP76, CYP80B1, CYP80F1, CYP90D1, DWF4/CYP90B1, F3'5'H/CYP75A, F3'H/CYP75B, F5H/CYP84A, G8O/G8H, IFS, IO, ROT3/CYP90C1, SLS, T16H, T3O
BAHD/acyltransferase 3 277 BAHD, HCT, RAS
Identification Result List
Search the public identification results for this species; click pathway or family legends above to narrow within this species.
Current family filter: IO
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Gene Pathway Family Confidence Status
Cichscaffold_1030005490.2 Alkaloid IO low borderline
Cichscaffold_10530008480.1 Alkaloid IO low borderline
Cichscaffold_11700017670.1 Alkaloid IO medium borderline
Cichscaffold_1440043430.1 Alkaloid IO medium borderline
Cichscaffold_1480046210.1 Alkaloid IO low borderline
Cichscaffold_14_10048070.1 Alkaloid IO medium borderline
Cichscaffold_1700066660.1 Alkaloid IO medium borderline
Cichscaffold_1720067350.1 Alkaloid IO medium borderline
Cichscaffold_180072350.1 Alkaloid IO medium borderline
Cichscaffold_180073040.1 Alkaloid IO medium borderline
Cichscaffold_1970083990.1 Alkaloid IO medium borderline
Cichscaffold_22790110990.1 Alkaloid IO low borderline
Cichscaffold_290143420.1 Alkaloid IO medium borderline
Cichscaffold_290143440.1 Alkaloid IO medium borderline
Cichscaffold_3020152830.1 Alkaloid IO medium borderline
Cichscaffold_3050153910.1 Alkaloid IO low borderline
Cichscaffold_310156240.1 Alkaloid IO medium borderline
Cichscaffold_3270163090.1 Alkaloid IO medium borderline
Cichscaffold_3400171940.4 Alkaloid IO low borderline
Cichscaffold_3490174580.1 Alkaloid IO low borderline
Cichscaffold_3490174580.2 Alkaloid IO low borderline
Cichscaffold_3490174580.3 Alkaloid IO low borderline
Cichscaffold_3930192000.1 Alkaloid IO low borderline
Cichscaffold_4020197170.1 Alkaloid IO medium borderline
Cichscaffold_4100199810.1 Alkaloid IO low borderline
Cichscaffold_440209970.1 Alkaloid IO low borderline
Cichscaffold_4760221410.1 Alkaloid IO low borderline
Cichscaffold_4760221430.1 Alkaloid IO low borderline
Cichscaffold_4970226920.2 Alkaloid IO low borderline
Cichscaffold_4970226920.3 Alkaloid IO low borderline
Cichscaffold_4970226920.4 Alkaloid IO low borderline
Cichscaffold_50228750.1 Alkaloid IO low borderline
Cichscaffold_5030231700.1 Alkaloid IO medium borderline
Cichscaffold_5560243330.1 Alkaloid IO low borderline
Cichscaffold_63180261350.1 Alkaloid IO medium borderline
Cichscaffold_65020265760.1 Alkaloid IO medium borderline
Cichscaffold_6950272540.1 Alkaloid IO medium borderline
Cichscaffold_6950272550.1 Alkaloid IO medium borderline
Cichscaffold_6950272570.1 Alkaloid IO medium borderline
Cichscaffold_71_20279660.1 Alkaloid IO medium borderline
Cichscaffold_7330282450.1 Alkaloid IO low borderline
Cichscaffold_790290720.1 Alkaloid IO medium borderline
Cichscaffold_90308850.1 Alkaloid IO medium borderline