Citrus ichangensis (citrus_ichangensis)
Imported from atlas release summary for Citrus ichangensis.
1849
Candidate Genes
106
Families
6
Pathways
Phylogenetic Position
The current species is positioned within the lineage framework used by this site. Its taxon group is highlighted below.
Species Metadata
Taxon group
Eudicots
Genome status
Genome-level resource available
Site Placement
- This page summarizes pathway coverage, family distributions, and the gene list for the species within the current public dataset.
- If you want to start from the public overview first, open the homepage and then return here for species-level drill-down.
- Family statistics correspond to enzyme families, while pathway statistics correspond to the real category-level pathways.
Pathway Coverage
6
Pathways
Family Distribution
1849
Candidate Genes
C4H
7.84%
C3'H/CYP98A
6.41%
CYP76
4.91%
IFS
4.82%
BAHD
4.42%
T3O
3.56%
4CL
3.51%
POD
3.2%
Other Families
61.33%
More Families (98)
F3H
169
3.09%
NMT
165
3.01%
UGT
157
2.87%
BR6OX2/CYP85A2
136
2.48%
DWF4/CYP90B1
129
2.36%
F3'H/CYP75B
127
2.32%
CODM/T6ODM
123
2.25%
7DLGT
90
1.64%
STR
89
1.63%
G8O/G8H
83
1.52%
CYP71
80
1.46%
TRI/TRII
75
1.37%
T16H
73
1.33%
BBE
73
1.33%
H6H
71
1.3%
IFR
68
1.24%
UFGT
66
1.21%
CYP90D1
63
1.15%
COMT
62
1.13%
CAS
62
1.13%
SMT1/SMT2/SMT3
54
0.99%
CAD
52
0.95%
GS
50
0.91%
PYKS
50
0.91%
SGD
46
0.84%
16OMT
45
0.82%
CSE
44
0.8%
IO
43
0.79%
F3'5'H/CYP75A
43
0.79%
LAC
42
0.77%
7DLH
37
0.68%
F5H/CYP84A
36
0.66%
GGPPS
34
0.62%
FNS
32
0.58%
GES
30
0.55%
COR
30
0.55%
LAMT
30
0.55%
ANR
30
0.55%
CCoAOMT
30
0.55%
CCR
29
0.53%
TPS
29
0.53%
CNMT
27
0.49%
NCS
25
0.46%
PAL
24
0.44%
CPD/CYP90A1
24
0.44%
ISY
23
0.42%
CHS
23
0.42%
TAT
23
0.42%
CYP51G1
23
0.42%
8HGO
22
0.4%
SLS
20
0.37%
BR6OX1/CYP85A1
20
0.37%
ANS/LDOX
19
0.35%
CYP80B1
18
0.33%
RAS
18
0.33%
AACT
18
0.33%
HCT
17
0.31%
DFR
16
0.29%
HPPR
14
0.26%
ROT3/CYP90C1
14
0.26%
MPO
13
0.24%
SQE
12
0.22%
CYP719
10
0.18%
6OMT_4OMT_SOMT
10
0.18%
PMT
10
0.18%
SQS/FDFT1
9
0.16%
DXS
9
0.16%
FPPS
9
0.16%
CHI
8
0.15%
MVK
8
0.15%
HMGS
8
0.15%
MCT/IspD
7
0.13%
XMT_MXMT_DXMT
6
0.11%
DXR
6
0.11%
CPR
5
0.09%
FK
5
0.09%
DWF5
5
0.09%
HYD1
5
0.09%
ODC
4
0.07%
DET2
4
0.07%
SMO1/SMO2
4
0.07%
HDR/IspH
4
0.07%
HMGR
4
0.07%
ADC
3
0.05%
CPI1
3
0.05%
MVD
3
0.05%
PMK
3
0.05%
TYDC_DDC
2
0.04%
FLS
2
0.04%
DWF7
2
0.04%
CMK/IspE
2
0.04%
CYP80F1
1
0.02%
TDC
1
0.02%
DWF1
1
0.02%
IDI
1
0.02%
MDS/IspF
1
0.02%
GPPS
1
0.02%
HDS/IspG
1
0.02%
Species Pathway Results
The links below show identification results for this species within each pathway, instead of opening the global pathway overview.
| Pathway | Candidate Genes | Families | Top family | Results |
|---|---|---|---|---|
| Terpenoid pathway | 490 | 19 | BAHD (197) | View species results |
| Alkaloid pathway | 460 | 26 | NMT (81) | View species results |
| Phenylpropanoid pathway | 410 | 12 | POD (165) | View species results |
| Rosmarinic acid pathway | 189 | 7 | C4H (105) | View species results |
| Flavonoid pathway | 168 | 13 | UFGT (42) | View species results |
| Steroid pathway | 132 | 15 | CAS (56) | View species results |
Broad Catalytic Groups
P450/oxygenase and BAHD/acyltransferase are counted separately as broad catalytic groups and are not mixed into the canonical enzyme-family count.
| Catalytic group | Families | Candidate genes | Included families |
|---|---|---|---|
| P450/oxygenase | 24 | 2488 | 7DLH, BR6OX1/CYP85A1, BR6OX2/CYP85A2, C3'H/CYP98A, C4H, CPD/CYP90A1, CYP51G1, CYP71, CYP719, CYP76, CYP80B1, CYP80F1, CYP90D1, DWF4/CYP90B1, F3'5'H/CYP75A, F3'H/CYP75B, F5H/CYP84A, G8O/G8H, IFS, IO, ROT3/CYP90C1, SLS, T16H, T3O |
| BAHD/acyltransferase | 3 | 277 | BAHD, HCT, RAS |
Identification Result List
Search the public identification results for this species; click pathway or family legends above to narrow within this species.
Current family filter: STR
| Gene | Pathway | Family | Confidence | Status | Best Target |
|---|---|---|---|---|---|
| Cichscaffold_100000820.1 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| Cichscaffold_100001890.1 | Alkaloid | STR | medium | pass | STR__00001__sp_D3GE74_STR1_MEDTR |
| Cichscaffold_1020004310.1 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| Cichscaffold_1060008930.1 | Alkaloid | STR | medium | pass | STR__00003__sp_Q9M1B4_SSL13_ARATH |
| Cichscaffold_1060008940.1 | Alkaloid | STR | medium | pass | STR__00003__sp_Q9M1B4_SSL13_ARATH |
| Cichscaffold_10780010040.1 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| Cichscaffold_1100011720.1 | Alkaloid | STR | medium | pass | STR__00001__sp_D3GE74_STR1_MEDTR |
| Cichscaffold_1150016060.1 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| Cichscaffold_130030840.1 | Alkaloid | STR | medium | pass | STR__00001__sp_D3GE74_STR1_MEDTR |
| Cichscaffold_130030860.1 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| Cichscaffold_130030860.2 | Alkaloid | STR | medium | pass | STR__00001__sp_D3GE74_STR1_MEDTR |
| Cichscaffold_130030860.3 | Alkaloid | STR | medium | pass | STR__00001__sp_D3GE74_STR1_MEDTR |
| Cichscaffold_130030860.4 | Alkaloid | STR | medium | pass | STR__00001__sp_D3GE74_STR1_MEDTR |
| Cichscaffold_130030860.5 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| Cichscaffold_14280041890.1 | Alkaloid | STR | medium | pass | STR__00001__sp_D3GE74_STR1_MEDTR |
| Cichscaffold_1590055840.1 | Alkaloid | STR | medium | pass | STR__00003__sp_Q9M1B4_SSL13_ARATH |
| Cichscaffold_16900063890.1 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| Cichscaffold_1700066850.1 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| Cichscaffold_190080240.1 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| Cichscaffold_190080240.2 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| Cichscaffold_190080240.3 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| Cichscaffold_190080250.1 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| Cichscaffold_190080250.2 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| Cichscaffold_190080250.3 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| Cichscaffold_19830085080.1 | Alkaloid | STR | medium | pass | STR__00003__sp_Q9M1B4_SSL13_ARATH |
| Cichscaffold_20480098090.1 | Alkaloid | STR | medium | pass | STR__00003__sp_Q9M1B4_SSL13_ARATH |
| Cichscaffold_20620099010.1 | Alkaloid | STR | medium | pass | STR__00001__sp_D3GE74_STR1_MEDTR |
| Cichscaffold_210101110.1 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| Cichscaffold_230113460.1 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| Cichscaffold_2380117830.1 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| Cichscaffold_300151280.1 | Alkaloid | STR | medium | pass | STR__00001__sp_D3GE74_STR1_MEDTR |
| Cichscaffold_3100157250.1 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| Cichscaffold_3190160280.1 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| Cichscaffold_33160168140.1 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| Cichscaffold_3350169170.1 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| Cichscaffold_3580177620.1 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| Cichscaffold_3580177660.1 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| Cichscaffold_3580177660.2 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| Cichscaffold_3580177660.3 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| Cichscaffold_3580177680.1 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| Cichscaffold_380186670.1 | Alkaloid | STR | medium | pass | STR__00001__sp_D3GE74_STR1_MEDTR |
| Cichscaffold_380186680.1 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| Cichscaffold_380186710.1 | Alkaloid | STR | medium | pass | STR__00001__sp_D3GE74_STR1_MEDTR |
| Cichscaffold_380186720.1 | Alkaloid | STR | medium | pass | STR__00001__sp_D3GE74_STR1_MEDTR |
| Cichscaffold_380186810.1 | Alkaloid | STR | medium | pass | STR__00001__sp_D3GE74_STR1_MEDTR |
| Cichscaffold_390190160.1 | Alkaloid | STR | medium | pass | STR__00003__sp_Q9M1B4_SSL13_ARATH |
| Cichscaffold_400196190.1 | Alkaloid | STR | medium | pass | STR__00001__sp_D3GE74_STR1_MEDTR |
| Cichscaffold_4040197490.1 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| Cichscaffold_40910198690.1 | Alkaloid | STR | medium | pass | STR__00001__sp_D3GE74_STR1_MEDTR |
| Cichscaffold_4190202240.1 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |