PlantSME Plant secondary metabolism enzyme database

Citrus ichangensis (citrus_ichangensis)

Imported from atlas release summary for Citrus ichangensis.

1849
Candidate Genes
106
Families
6
Pathways
Phylogenetic Position
The current species is positioned within the lineage framework used by this site. Its taxon group is highlighted below.
Species Metadata
Taxon group
Eudicots
Genome status
Genome-level resource available
Site Placement
  • This page summarizes pathway coverage, family distributions, and the gene list for the species within the current public dataset.
  • If you want to start from the public overview first, open the homepage and then return here for species-level drill-down.
  • Family statistics correspond to enzyme families, while pathway statistics correspond to the real category-level pathways.
Family Distribution
More Families (98)
Species Pathway Results
The links below show identification results for this species within each pathway, instead of opening the global pathway overview.
Pathway Candidate Genes Families Top family Results
Terpenoid pathway 490 19 BAHD (197) View species results
Alkaloid pathway 460 26 NMT (81) View species results
Phenylpropanoid pathway 410 12 POD (165) View species results
Rosmarinic acid pathway 189 7 C4H (105) View species results
Flavonoid pathway 168 13 UFGT (42) View species results
Steroid pathway 132 15 CAS (56) View species results
Broad Catalytic Groups
P450/oxygenase and BAHD/acyltransferase are counted separately as broad catalytic groups and are not mixed into the canonical enzyme-family count.
Catalytic group Families Candidate genes Included families
P450/oxygenase 24 2488 7DLH, BR6OX1/CYP85A1, BR6OX2/CYP85A2, C3'H/CYP98A, C4H, CPD/CYP90A1, CYP51G1, CYP71, CYP719, CYP76, CYP80B1, CYP80F1, CYP90D1, DWF4/CYP90B1, F3'5'H/CYP75A, F3'H/CYP75B, F5H/CYP84A, G8O/G8H, IFS, IO, ROT3/CYP90C1, SLS, T16H, T3O
BAHD/acyltransferase 3 277 BAHD, HCT, RAS
Identification Result List
Search the public identification results for this species; click pathway or family legends above to narrow within this species.
Current family filter: T16H
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Gene Pathway Family Confidence Status
Cichscaffold_1000002440.1 Alkaloid T16H high pass
Cichscaffold_1000002460.1 Alkaloid T16H medium borderline
Cichscaffold_1000002480.1 Alkaloid T16H medium borderline
Cichscaffold_1040006560.1 Alkaloid T16H medium borderline
Cichscaffold_1120013300.1 Alkaloid T16H low borderline
Cichscaffold_1130014430.1 Alkaloid T16H medium borderline
Cichscaffold_11700017680.1 Alkaloid T16H medium borderline
Cichscaffold_1170017220.1 Alkaloid T16H low borderline
Cichscaffold_1170017240.1 Alkaloid T16H medium borderline
Cichscaffold_1220025070.1 Alkaloid T16H low borderline
Cichscaffold_1270029360.1 Alkaloid T16H low borderline
Cichscaffold_1400039960.1 Alkaloid T16H medium borderline
Cichscaffold_1430041960.1 Alkaloid T16H low borderline
Cichscaffold_1430042060.1 Alkaloid T16H medium borderline
Cichscaffold_1430042080.1 Alkaloid T16H medium borderline
Cichscaffold_1430042110.1 Alkaloid T16H medium borderline
Cichscaffold_1430042120.1 Alkaloid T16H medium pass
Cichscaffold_14730045420.1 Alkaloid T16H medium borderline
Cichscaffold_14730045440.1 Alkaloid T16H medium borderline
Cichscaffold_14_10047140.1 Alkaloid T16H medium borderline
Cichscaffold_14_10047150.1 Alkaloid T16H medium borderline
Cichscaffold_160058070.1 Alkaloid T16H medium borderline
Cichscaffold_160058110.1 Alkaloid T16H medium borderline
Cichscaffold_160058130.1 Alkaloid T16H medium borderline
Cichscaffold_16570061430.1 Alkaloid T16H medium borderline
Cichscaffold_16760062570.1 Alkaloid T16H medium borderline
Cichscaffold_1750069610.1 Alkaloid T16H medium borderline
Cichscaffold_1750069620.1 Alkaloid T16H medium borderline
Cichscaffold_1750069680.1 Alkaloid T16H medium borderline
Cichscaffold_1750069700.1 Alkaloid T16H low borderline
Cichscaffold_1750069740.1 Alkaloid T16H low borderline
Cichscaffold_180072260.1 Alkaloid T16H medium borderline
Cichscaffold_180073030.1 Alkaloid T16H medium pass
Cichscaffold_1820075020.1 Alkaloid T16H medium borderline
Cichscaffold_1820075060.1 Alkaloid T16H medium borderline
Cichscaffold_18430076420.1 Alkaloid T16H medium borderline
Cichscaffold_19080081380.1 Alkaloid T16H medium borderline
Cichscaffold_20090680.1 Alkaloid T16H medium borderline
Cichscaffold_20092180.1 Alkaloid T16H medium borderline
Cichscaffold_2180104500.1 Alkaloid T16H medium borderline
Cichscaffold_2600130590.1 Alkaloid T16H medium borderline
Cichscaffold_26830133250.1 Alkaloid T16H low borderline
Cichscaffold_2730135440.2 Alkaloid T16H low borderline
Cichscaffold_2730135440.5 Alkaloid T16H low borderline
Cichscaffold_27810137390.1 Alkaloid T16H medium borderline
Cichscaffold_2980148170.1 Alkaloid T16H medium borderline
Cichscaffold_310156250.1 Alkaloid T16H medium pass
Cichscaffold_310156300.1 Alkaloid T16H medium pass
Cichscaffold_35280176930.1 Alkaloid T16H medium borderline
Cichscaffold_3600178910.1 Alkaloid T16H low borderline