PlantSME Plant secondary metabolism enzyme database

Citrus ichangensis (citrus_ichangensis)

Imported from atlas release summary for Citrus ichangensis.

1849
Candidate Genes
106
Families
6
Pathways
Phylogenetic Position
The current species is positioned within the lineage framework used by this site. Its taxon group is highlighted below.
Species Metadata
Taxon group
Eudicots
Genome status
Genome-level resource available
Site Placement
  • This page summarizes pathway coverage, family distributions, and the gene list for the species within the current public dataset.
  • If you want to start from the public overview first, open the homepage and then return here for species-level drill-down.
  • Family statistics correspond to enzyme families, while pathway statistics correspond to the real category-level pathways.
Family Distribution
More Families (98)
Species Pathway Results
The links below show identification results for this species within each pathway, instead of opening the global pathway overview.
Pathway Candidate Genes Families Top family Results
Terpenoid pathway 490 19 BAHD (197) View species results
Alkaloid pathway 460 26 NMT (81) View species results
Phenylpropanoid pathway 410 12 POD (165) View species results
Rosmarinic acid pathway 189 7 C4H (105) View species results
Flavonoid pathway 168 13 UFGT (42) View species results
Steroid pathway 132 15 CAS (56) View species results
Broad Catalytic Groups
P450/oxygenase and BAHD/acyltransferase are counted separately as broad catalytic groups and are not mixed into the canonical enzyme-family count.
Catalytic group Families Candidate genes Included families
P450/oxygenase 24 2488 7DLH, BR6OX1/CYP85A1, BR6OX2/CYP85A2, C3'H/CYP98A, C4H, CPD/CYP90A1, CYP51G1, CYP71, CYP719, CYP76, CYP80B1, CYP80F1, CYP90D1, DWF4/CYP90B1, F3'5'H/CYP75A, F3'H/CYP75B, F5H/CYP84A, G8O/G8H, IFS, IO, ROT3/CYP90C1, SLS, T16H, T3O
BAHD/acyltransferase 3 277 BAHD, HCT, RAS
Identification Result List
Search the public identification results for this species; click pathway or family legends above to narrow within this species.
Current family filter: T3O
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Gene Pathway Family Confidence Status
Cichscaffold_170065220.1 Alkaloid T3O medium borderline
Cichscaffold_170065280.1 Alkaloid T3O medium borderline
Cichscaffold_1720067280.1 Alkaloid T3O medium borderline
Cichscaffold_1720067300.1 Alkaloid T3O medium borderline
Cichscaffold_1720067370.1 Alkaloid T3O medium borderline
Cichscaffold_1720067390.1 Alkaloid T3O medium borderline
Cichscaffold_1750069690.1 Alkaloid T3O low borderline
Cichscaffold_1760070240.1 Alkaloid T3O medium borderline
Cichscaffold_17780070930.1 Alkaloid T3O low borderline
Cichscaffold_180072240.1 Alkaloid T3O medium borderline
Cichscaffold_180073020.1 Alkaloid T3O medium borderline
Cichscaffold_1820075040.1 Alkaloid T3O medium borderline
Cichscaffold_1820075050.1 Alkaloid T3O medium borderline
Cichscaffold_1820075080.1 Alkaloid T3O medium borderline
Cichscaffold_1820075100.1 Alkaloid T3O medium borderline
Cichscaffold_18220075560.1 Alkaloid T3O medium borderline
Cichscaffold_18710078380.1 Alkaloid T3O medium borderline
Cichscaffold_18710078400.1 Alkaloid T3O medium borderline
Cichscaffold_18780078430.1 Alkaloid T3O medium borderline
Cichscaffold_190079490.1 Alkaloid T3O low borderline
Cichscaffold_19190081650.1 Alkaloid T3O medium pass
Cichscaffold_19440083140.1 Alkaloid T3O medium borderline
Cichscaffold_1960083810.1 Alkaloid T3O medium borderline
Cichscaffold_1960083900.1 Alkaloid T3O medium borderline
Cichscaffold_19640083950.1 Alkaloid T3O medium borderline
Cichscaffold_1970084000.1 Alkaloid T3O medium borderline
Cichscaffold_1970084010.1 Alkaloid T3O medium borderline
Cichscaffold_1970084050.1 Alkaloid T3O medium borderline
Cichscaffold_1980084680.2 Alkaloid T3O low borderline
Cichscaffold_1_20089610.1 Alkaloid T3O medium pass
Cichscaffold_20092980.1 Alkaloid T3O medium pass
Cichscaffold_20100096470.1 Alkaloid T3O medium borderline
Cichscaffold_2290111670.1 Alkaloid T3O medium borderline
Cichscaffold_230113290.1 Alkaloid T3O medium pass
Cichscaffold_230113290.2 Alkaloid T3O medium pass
Cichscaffold_230113560.1 Alkaloid T3O medium pass
Cichscaffold_230113560.2 Alkaloid T3O medium pass
Cichscaffold_230113560.3 Alkaloid T3O medium pass
Cichscaffold_230113560.4 Alkaloid T3O medium pass
Cichscaffold_2310115340.1 Alkaloid T3O medium borderline
Cichscaffold_2480124010.1 Alkaloid T3O low borderline
Cichscaffold_250125390.1 Alkaloid T3O medium pass
Cichscaffold_26150131450.1 Alkaloid T3O medium borderline
Cichscaffold_26440132220.1 Alkaloid T3O medium borderline
Cichscaffold_2680133110.1 Alkaloid T3O low borderline
Cichscaffold_280137910.1 Alkaloid T3O medium borderline
Cichscaffold_2810139630.1 Alkaloid T3O medium borderline
Cichscaffold_290142900.1 Alkaloid T3O medium pass
Cichscaffold_290144550.1 Alkaloid T3O medium borderline
Cichscaffold_290144590.1 Alkaloid T3O low borderline