PlantSME Plant secondary metabolism enzyme database

Citrus ichangensis (citrus_ichangensis)

Imported from atlas release summary for Citrus ichangensis.

1849
Candidate Genes
106
Families
6
Pathways
Phylogenetic Position
The current species is positioned within the lineage framework used by this site. Its taxon group is highlighted below.
Species Metadata
Taxon group
Eudicots
Genome status
Genome-level resource available
Site Placement
  • This page summarizes pathway coverage, family distributions, and the gene list for the species within the current public dataset.
  • If you want to start from the public overview first, open the homepage and then return here for species-level drill-down.
  • Family statistics correspond to enzyme families, while pathway statistics correspond to the real category-level pathways.
Family Distribution
More Families (98)
Species Pathway Results
The links below show identification results for this species within each pathway, instead of opening the global pathway overview.
Pathway Candidate Genes Families Top family Results
Terpenoid pathway 490 19 BAHD (197) View species results
Alkaloid pathway 460 26 NMT (81) View species results
Phenylpropanoid pathway 410 12 POD (165) View species results
Rosmarinic acid pathway 189 7 C4H (105) View species results
Flavonoid pathway 168 13 UFGT (42) View species results
Steroid pathway 132 15 CAS (56) View species results
Broad Catalytic Groups
P450/oxygenase and BAHD/acyltransferase are counted separately as broad catalytic groups and are not mixed into the canonical enzyme-family count.
Catalytic group Families Candidate genes Included families
P450/oxygenase 24 2488 7DLH, BR6OX1/CYP85A1, BR6OX2/CYP85A2, C3'H/CYP98A, C4H, CPD/CYP90A1, CYP51G1, CYP71, CYP719, CYP76, CYP80B1, CYP80F1, CYP90D1, DWF4/CYP90B1, F3'5'H/CYP75A, F3'H/CYP75B, F5H/CYP84A, G8O/G8H, IFS, IO, ROT3/CYP90C1, SLS, T16H, T3O
BAHD/acyltransferase 3 277 BAHD, HCT, RAS
Identification Result List
Search the public identification results for this species; click pathway or family legends above to narrow within this species.
Current family filter: T3O
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Gene Pathway Family Confidence Status
Cichscaffold_290144600.1 Alkaloid T3O low borderline
Cichscaffold_290144620.1 Alkaloid T3O low borderline
Cichscaffold_2970147820.1 Alkaloid T3O medium borderline
Cichscaffold_2980148180.1 Alkaloid T3O medium borderline
Cichscaffold_3050153670.1 Alkaloid T3O medium borderline
Cichscaffold_3050153670.2 Alkaloid T3O medium borderline
Cichscaffold_30770154570.1 Alkaloid T3O medium borderline
Cichscaffold_3080154800.1 Alkaloid T3O medium borderline
Cichscaffold_310156310.1 Alkaloid T3O medium borderline
Cichscaffold_310157060.1 Alkaloid T3O low borderline
Cichscaffold_31650159560.1 Alkaloid T3O medium borderline
Cichscaffold_3200161010.1 Alkaloid T3O medium borderline
Cichscaffold_3200161020.1 Alkaloid T3O medium borderline
Cichscaffold_3440173240.1 Alkaloid T3O medium borderline
Cichscaffold_3600178900.1 Alkaloid T3O medium borderline
Cichscaffold_3600178920.1 Alkaloid T3O medium borderline
Cichscaffold_3610179180.1 Alkaloid T3O medium borderline
Cichscaffold_3610179190.1 Alkaloid T3O medium borderline
Cichscaffold_3610179200.1 Alkaloid T3O medium borderline
Cichscaffold_3610179210.1 Alkaloid T3O medium borderline
Cichscaffold_3610179220.1 Alkaloid T3O medium borderline
Cichscaffold_3610179230.1 Alkaloid T3O medium borderline
Cichscaffold_3610179240.1 Alkaloid T3O medium borderline
Cichscaffold_3610179260.1 Alkaloid T3O medium borderline
Cichscaffold_3610179280.1 Alkaloid T3O medium borderline
Cichscaffold_3610179290.1 Alkaloid T3O medium borderline
Cichscaffold_36290179760.1 Alkaloid T3O medium borderline
Cichscaffold_3630179950.1 Alkaloid T3O medium borderline
Cichscaffold_3630179990.1 Alkaloid T3O medium pass
Cichscaffold_3700183780.1 Alkaloid T3O medium pass
Cichscaffold_3700183780.2 Alkaloid T3O medium pass
Cichscaffold_370182000.1 Alkaloid T3O medium borderline
Cichscaffold_370182030.1 Alkaloid T3O medium borderline
Cichscaffold_370182720.1 Alkaloid T3O medium pass
Cichscaffold_39090191230.1 Alkaloid T3O medium borderline
Cichscaffold_3950192230.1 Alkaloid T3O medium pass
Cichscaffold_3950192230.2 Alkaloid T3O medium pass
Cichscaffold_3950192240.1 Alkaloid T3O medium pass
Cichscaffold_3950192260.1 Alkaloid T3O medium pass
Cichscaffold_3960192430.1 Alkaloid T3O medium borderline
Cichscaffold_3960192490.1 Alkaloid T3O medium borderline
Cichscaffold_4000196710.1 Alkaloid T3O medium pass
Cichscaffold_40194240.1 Alkaloid T3O medium borderline
Cichscaffold_40194250.1 Alkaloid T3O medium borderline
Cichscaffold_4100199780.1 Alkaloid T3O medium pass
Cichscaffold_410199460.1 Alkaloid T3O medium pass
Cichscaffold_4180202050.1 Alkaloid T3O medium pass
Cichscaffold_4250205160.1 Alkaloid T3O medium pass
Cichscaffold_4290206210.1 Alkaloid T3O low borderline
Cichscaffold_4290206220.1 Alkaloid T3O low borderline