Citrus ichangensis (citrus_ichangensis)
Imported from atlas release summary for Citrus ichangensis.
2729
Candidate Protein Records
1849
Pathway-Level Records
5474
Family-Level Calls
Phylogenetic Position
The current species is positioned within the lineage framework used by this site. Its taxon group is highlighted below.
Species Metadata
Taxon group
Eudicots
Genome status
Genome-level resource available
Site Placement
- This page summarizes pathway coverage, family distributions, and protein/isoform records for the species within the current public dataset.
- If you want to start from the public overview first, open the homepage and then return here for species-level drill-down.
- Family statistics correspond to enzyme families, while pathway statistics correspond to the real category-level pathways.
- Download candidate protein FASTA for this species
Pathway Coverage
6
Pathways
Family Distribution
5474
Family-Level Calls
C4H
7.84%
C3'H/CYP98A
6.41%
CYP76
4.91%
IFS
4.82%
BAHD
4.42%
T3O
3.56%
4CL
3.51%
POD
3.2%
Other Families
61.33%
More Families (98)
F3H
169
3.09%
NMT
165
3.01%
UGT
157
2.87%
BR6OX2/CYP85A2
136
2.48%
DWF4/CYP90B1
129
2.36%
F3'H/CYP75B
127
2.32%
CODM/T6ODM
123
2.25%
7DLGT
90
1.64%
STR
89
1.63%
G8O/G8H
83
1.52%
CYP71
80
1.46%
TRI/TRII
75
1.37%
T16H
73
1.33%
BBE
73
1.33%
H6H
71
1.3%
IFR
68
1.24%
UFGT
66
1.21%
CYP90D1
63
1.15%
COMT
62
1.13%
CAS
62
1.13%
SMT1/SMT2/SMT3
54
0.99%
CAD
52
0.95%
GS
50
0.91%
PYKS
50
0.91%
SGD
46
0.84%
16OMT
45
0.82%
CSE
44
0.8%
IO
43
0.79%
F3'5'H/CYP75A
43
0.79%
LAC
42
0.77%
7DLH
37
0.68%
F5H/CYP84A
36
0.66%
GGPPS
34
0.62%
FNS
32
0.58%
GES
30
0.55%
COR
30
0.55%
LAMT
30
0.55%
ANR
30
0.55%
CCoAOMT
30
0.55%
CCR
29
0.53%
TPS
29
0.53%
CNMT
27
0.49%
NCS
25
0.46%
PAL
24
0.44%
CPD/CYP90A1
24
0.44%
ISY
23
0.42%
CHS
23
0.42%
TAT
23
0.42%
CYP51G1
23
0.42%
8HGO
22
0.4%
SLS
20
0.37%
BR6OX1/CYP85A1
20
0.37%
ANS/LDOX
19
0.35%
CYP80B1
18
0.33%
RAS
18
0.33%
AACT
18
0.33%
HCT
17
0.31%
DFR
16
0.29%
HPPR
14
0.26%
ROT3/CYP90C1
14
0.26%
MPO
13
0.24%
SQE
12
0.22%
CYP719
10
0.18%
6OMT_4OMT_SOMT
10
0.18%
PMT
10
0.18%
SQS/FDFT1
9
0.16%
DXS
9
0.16%
FPPS
9
0.16%
CHI
8
0.15%
MVK
8
0.15%
HMGS
8
0.15%
MCT/IspD
7
0.13%
XMT_MXMT_DXMT
6
0.11%
DXR
6
0.11%
CPR
5
0.09%
FK
5
0.09%
DWF5
5
0.09%
HYD1
5
0.09%
ODC
4
0.07%
DET2
4
0.07%
SMO1/SMO2
4
0.07%
HDR/IspH
4
0.07%
HMGR
4
0.07%
ADC
3
0.05%
CPI1
3
0.05%
MVD
3
0.05%
PMK
3
0.05%
TYDC_DDC
2
0.04%
FLS
2
0.04%
DWF7
2
0.04%
CMK/IspE
2
0.04%
CYP80F1
1
0.02%
TDC
1
0.02%
DWF1
1
0.02%
IDI
1
0.02%
MDS/IspF
1
0.02%
GPPS
1
0.02%
HDS/IspG
1
0.02%
Species Pathway Results
The links below show identification results for this species within each pathway, instead of opening the global pathway overview.
| Pathway | Pathway-Level Records | Detected Families | Top family | Results |
|---|---|---|---|---|
| Terpenoid pathway | 490 | 19 | BAHD (197) | View species results |
| Alkaloid pathway | 460 | 26 | NMT (81) | View species results |
| Phenylpropanoid pathway | 410 | 12 | POD (165) | View species results |
| Rosmarinic acid pathway | 189 | 7 | C4H (105) | View species results |
| Flavonoid pathway | 168 | 13 | UFGT (42) | View species results |
| Steroid pathway | 132 | 15 | CAS (56) | View species results |
Broad Catalytic Groups
P450/oxygenase and BAHD/acyltransferase are counted separately as broad catalytic groups and are not mixed into the canonical enzyme-family count.
| Catalytic group | Detected families | Assignment calls | Included families |
|---|---|---|---|
| P450/oxygenase | 24 | 2488 | 7DLH, BR6OX1/CYP85A1, BR6OX2/CYP85A2, C3'H/CYP98A, C4H, CPD/CYP90A1, CYP51G1, CYP71, CYP719, CYP76, CYP80B1, CYP80F1, CYP90D1, DWF4/CYP90B1, F3'5'H/CYP75A, F3'H/CYP75B, F5H/CYP84A, G8O/G8H, IFS, IO, ROT3/CYP90C1, SLS, T16H, T3O |
| BAHD/acyltransferase | 3 | 277 | BAHD, HCT, RAS |
Identification Result List
Search the public protein/isoform identification results for this species; click pathway or family legends above to narrow within this species.
| Protein/Isoform Record | Pathway | Family | Confidence | Status | Best Target |
|---|---|---|---|---|---|
| Cichscaffold_3760185290.1 | Alkaloid | TRI/TRII | low | borderline | TRI_TRII__00004__sp_H9BFQ2_TPRL3_ERYCB |
| Cichscaffold_390190040.1 | Alkaloid | TRI/TRII | medium | pass | TRI_TRII__00003__sp_H9BFQ1_TPRL2_ERYCB |
| Cichscaffold_4000196860.1 | Alkaloid | TRI/TRII | low | borderline | TRI_TRII__00007__sp_Q9ZW16_TRNHA_ARATH |
| Cichscaffold_4000196870.1 | Alkaloid | TRI/TRII | medium | pass | TRI_TRII__00007__sp_Q9ZW16_TRNHA_ARATH |
| Cichscaffold_4000196890.1 | Alkaloid | TRI/TRII | low | borderline | TRI_TRII__00007__sp_Q9ZW16_TRNHA_ARATH |
| Cichscaffold_4000196900.1 | Alkaloid | TRI/TRII | medium | pass | TRI_TRII__00007__sp_Q9ZW16_TRNHA_ARATH |
| Cichscaffold_4000196910.1 | Alkaloid | TRI/TRII | low | borderline | TRI_TRII__00007__sp_Q9ZW16_TRNHA_ARATH |
| Cichscaffold_4060198030.1 | Alkaloid | TRI/TRII | medium | pass | TRI_TRII__00002__sp_H9BFQ0_TPRL1_ERYCB |
| Cichscaffold_420203420.1 | Alkaloid | TRI/TRII | medium | pass | TRI_TRII__00002__sp_H9BFQ0_TPRL1_ERYCB |
| Cichscaffold_42770206110.1 | Alkaloid | TRI/TRII | medium | pass | TRI_TRII__00007__sp_Q9ZW16_TRNHA_ARATH |
| Cichscaffold_5010231320.1 | Alkaloid | TRI/TRII | low | borderline | TRI_TRII__00004__sp_H9BFQ2_TPRL3_ERYCB |
| Cichscaffold_5010231390.1 | Alkaloid | TRI/TRII | low | borderline | TRI_TRII__00004__sp_H9BFQ2_TPRL3_ERYCB |
| Cichscaffold_50228030.1 | Alkaloid | TRI/TRII | medium | pass | TRI_TRII__00009__sp_Q9ZW19_TRNHC_ARATH |
| Cichscaffold_50228030.2 | Alkaloid | TRI/TRII | medium | pass | TRI_TRII__00008__sp_Q9ZW18_SAG13_ARATH |
| Cichscaffold_5440241300.1 | Alkaloid | TRI/TRII | low | borderline | TRI_TRII__00004__sp_H9BFQ2_TPRL3_ERYCB |
| Cichscaffold_57_20247600.1 | Alkaloid | TRI/TRII | low | borderline | TRI_TRII__00005__sp_P50162_TRN1_DATST |
| Cichscaffold_580248250.1 | Alkaloid | TRI/TRII | medium | pass | TRI_TRII__00006__sp_Q9ZW03_TRNH3_ARATH |
| Cichscaffold_580248260.1 | Alkaloid | TRI/TRII | medium | pass | TRI_TRII__00007__sp_Q9ZW16_TRNHA_ARATH |
| Cichscaffold_580248270.1 | Alkaloid | TRI/TRII | medium | pass | TRI_TRII__00008__sp_Q9ZW18_SAG13_ARATH |
| Cichscaffold_580248300.1 | Alkaloid | TRI/TRII | medium | pass | TRI_TRII__00005__sp_P50162_TRN1_DATST |
| Cichscaffold_580248310.1 | Alkaloid | TRI/TRII | low | borderline | TRI_TRII__00005__sp_P50162_TRN1_DATST |
| Cichscaffold_580248320.1 | Alkaloid | TRI/TRII | medium | pass | TRI_TRII__00006__sp_Q9ZW03_TRNH3_ARATH |
| Cichscaffold_580248330.1 | Alkaloid | TRI/TRII | medium | pass | TRI_TRII__00005__sp_P50162_TRN1_DATST |
| Cichscaffold_580248340.1 | Alkaloid | TRI/TRII | medium | pass | TRI_TRII__00005__sp_P50162_TRN1_DATST |
| Cichscaffold_6020254800.1 | Alkaloid | TRI/TRII | medium | pass | TRI_TRII__00008__sp_Q9ZW18_SAG13_ARATH |
| Cichscaffold_62300259500.1 | Alkaloid | TRI/TRII | medium | pass | TRI_TRII__00001__sp_A7DY56_TRN1_COCOF |
| Cichscaffold_630260790.1 | Alkaloid | TRI/TRII | medium | pass | TRI_TRII__00003__sp_H9BFQ1_TPRL2_ERYCB |
| Cichscaffold_630260800.1 | Alkaloid | TRI/TRII | medium | pass | TRI_TRII__00002__sp_H9BFQ0_TPRL1_ERYCB |
| Cichscaffold_7430284480.1 | Alkaloid | TRI/TRII | medium | pass | TRI_TRII__00009__sp_Q9ZW19_TRNHC_ARATH |
| Cichscaffold_80293720.1 | Alkaloid | TRI/TRII | medium | pass | TRI_TRII__00002__sp_H9BFQ0_TPRL1_ERYCB |
| Cichscaffold_80293730.1 | Alkaloid | TRI/TRII | medium | pass | TRI_TRII__00002__sp_H9BFQ0_TPRL1_ERYCB |
| Cichscaffold_80293740.1 | Alkaloid | TRI/TRII | medium | pass | TRI_TRII__00003__sp_H9BFQ1_TPRL2_ERYCB |
| Cichscaffold_80293750.1 | Alkaloid | TRI/TRII | medium | pass | TRI_TRII__00003__sp_H9BFQ1_TPRL2_ERYCB |
| Cichscaffold_90307520.1 | Alkaloid | TRI/TRII | medium | pass | TRI_TRII__00003__sp_H9BFQ1_TPRL2_ERYCB |
| Cichscaffold_90307590.1 | Alkaloid | TRI/TRII | medium | pass | TRI_TRII__00002__sp_H9BFQ0_TPRL1_ERYCB |
| Cichscaffold_4360208260.1 | Alkaloid | TYDC_DDC | medium | borderline | TYDC_DDC__00005__sp_Q9M0G4_TYDC2_ARATH |
| Cichscaffold_4360208260.2 | Alkaloid | TYDC_DDC | medium | borderline | TYDC_DDC__00005__sp_Q9M0G4_TYDC2_ARATH |
| Cichscaffold_10940011410.1 | Alkaloid | XMT_MXMT_DXMT | medium | borderline | XMT_MXMT_DXMT__00005__sp_A4GE69_XMT1_COFCA |
| Cichscaffold_12150024440.1 | Alkaloid | XMT_MXMT_DXMT | medium | borderline | XMT_MXMT_DXMT__00005__sp_A4GE69_XMT1_COFCA |
| Cichscaffold_3300167600.1 | Alkaloid | XMT_MXMT_DXMT | medium | borderline | XMT_MXMT_DXMT__00006__sp_A4GE70_DXMT1_COFCA |
| Cichscaffold_8010294910.1 | Alkaloid | XMT_MXMT_DXMT | medium | borderline | XMT_MXMT_DXMT__00009__sp_Q9AVK0_XMT1_COFAR |
| Cichscaffold_8400300120.1 | Alkaloid | XMT_MXMT_DXMT | medium | borderline | XMT_MXMT_DXMT__00005__sp_A4GE69_XMT1_COFCA |
| Cichscaffold_8400300130.1 | Alkaloid | XMT_MXMT_DXMT | medium | borderline | XMT_MXMT_DXMT__00005__sp_A4GE69_XMT1_COFCA |
| Cichscaffold_1030005740.1 | Flavonoid | 4CL | low | borderline | 4CL__00014__sp_Q84P24_4CLL6_ARATH |
| Cichscaffold_1030005740.2 | Flavonoid | 4CL | low | borderline | 4CL__00014__sp_Q84P24_4CLL6_ARATH |
| Cichscaffold_1030005740.3 | Flavonoid | 4CL | low | borderline | 4CL__00014__sp_Q84P24_4CLL6_ARATH |
| Cichscaffold_1150015760.1 | Flavonoid | 4CL | medium | pass | 4CL__00016__sp_Q9M0X9_4CLL7_ARATH |
| Cichscaffold_1150015760.2 | Flavonoid | 4CL | medium | pass | 4CL__00016__sp_Q9M0X9_4CLL7_ARATH |
| Cichscaffold_1150015760.3 | Flavonoid | 4CL | medium | pass | 4CL__00016__sp_Q9M0X9_4CLL7_ARATH |
| Cichscaffold_1150015760.4 | Flavonoid | 4CL | medium | pass | 4CL__00016__sp_Q9M0X9_4CLL7_ARATH |