Gossypium herbaceum (gossypium_herbaceum)
Imported from atlas release summary for Gossypium herbaceum.
2554
Candidate Protein Records
2126
Pathway-Level Records
5491
Family-Level Calls
Phylogenetic Position
The current species is positioned within the lineage framework used by this site. Its taxon group is highlighted below.
Species Metadata
Taxon group
Eudicots
Genome status
Genome-level resource available
Site Placement
- This page summarizes pathway coverage, family distributions, and protein/isoform records for the species within the current public dataset.
- If you want to start from the public overview first, open the homepage and then return here for species-level drill-down.
- Family statistics correspond to enzyme families, while pathway statistics correspond to the real category-level pathways.
- Download candidate protein FASTA for this species
Pathway Coverage
6
Pathways
Family Distribution
5491
Family-Level Calls
C4H
7.23%
C3'H/CYP98A
6.08%
BAHD
5.08%
CYP76
3.93%
IFS
3.81%
UGT
3.77%
T3O
3.64%
F3H
3.55%
Other Families
62.9%
More Families (98)
7DLGT
187
3.41%
UFGT
183
3.33%
4CL
177
3.22%
POD
175
3.19%
DWF4/CYP90B1
112
2.04%
BR6OX2/CYP85A2
101
1.84%
F3'H/CYP75B
100
1.82%
CODM/T6ODM
99
1.8%
NMT
97
1.77%
STR
96
1.75%
H6H
89
1.62%
CAD
85
1.55%
TPS
84
1.53%
CAS
79
1.44%
GES
78
1.42%
LAC
77
1.4%
CYP90D1
74
1.35%
TRI/TRII
72
1.31%
CYP71
72
1.31%
SMT1/SMT2/SMT3
63
1.15%
7DLH
57
1.04%
CSE
52
0.95%
BBE
51
0.93%
COMT
51
0.93%
HCT
50
0.91%
GS
48
0.87%
RAS
42
0.76%
G8O/G8H
41
0.75%
PYKS
40
0.73%
IO
40
0.73%
NCS
38
0.69%
T16H
37
0.67%
FNS
36
0.66%
IFR
36
0.66%
16OMT
35
0.64%
F3'5'H/CYP75A
33
0.6%
F5H/CYP84A
31
0.56%
BR6OX1/CYP85A1
30
0.55%
ANR
29
0.53%
CCR
28
0.51%
CPD/CYP90A1
27
0.49%
GGPPS
26
0.47%
COR
25
0.46%
SGD
24
0.44%
TAT
24
0.44%
CYP51G1
24
0.44%
PMT
22
0.4%
ROT3/CYP90C1
22
0.4%
PAL
21
0.38%
SLS
20
0.36%
8HGO
20
0.36%
DFR
16
0.29%
SQE
14
0.25%
TYDC_DDC
13
0.24%
LAMT
13
0.24%
CNMT
13
0.24%
FPPS
13
0.24%
ANS/LDOX
12
0.22%
CHS
12
0.22%
HMGS
12
0.22%
CCoAOMT
10
0.18%
MPO
9
0.16%
HMGR
9
0.16%
CYP80B1
8
0.15%
HPPR
8
0.15%
SQS/FDFT1
8
0.15%
MVK
8
0.15%
ISY
7
0.13%
6OMT_4OMT_SOMT
7
0.13%
CPR
7
0.13%
SMO1/SMO2
7
0.13%
MVD
7
0.13%
AACT
7
0.13%
CYP719
6
0.11%
DXS
6
0.11%
ADC
5
0.09%
XMT_MXMT_DXMT
5
0.09%
DET2
5
0.09%
TDC
4
0.07%
CYP80F1
4
0.07%
CHI
4
0.07%
HDS/IspG
4
0.07%
ODC
3
0.05%
FLS
3
0.05%
DWF5
3
0.05%
DWF1
3
0.05%
MDS/IspF
3
0.05%
MCT/IspD
3
0.05%
HDR/IspH
3
0.05%
DXR
2
0.04%
FK
1
0.02%
CPI1
1
0.02%
DWF7
1
0.02%
HYD1
1
0.02%
CMK/IspE
1
0.02%
IDI
1
0.02%
PMK
1
0.02%
GPPS
1
0.02%
Species Pathway Results
The links below show identification results for this species within each pathway, instead of opening the global pathway overview.
| Pathway | Pathway-Level Records | Detected Families | Top family | Results |
|---|---|---|---|---|
| Terpenoid pathway | 638 | 22 | BAHD (210) | View species results |
| Alkaloid pathway | 486 | 25 | 7DLGT (85) | View species results |
| Phenylpropanoid pathway | 451 | 12 | POD (164) | View species results |
| Flavonoid pathway | 256 | 12 | UFGT (166) | View species results |
| Rosmarinic acid pathway | 171 | 7 | C4H (73) | View species results |
| Steroid pathway | 124 | 11 | CAS (63) | View species results |
Broad Catalytic Groups
P450/oxygenase and BAHD/acyltransferase are counted separately as broad catalytic groups and are not mixed into the canonical enzyme-family count.
| Catalytic group | Detected families | Assignment calls | Included families |
|---|---|---|---|
| P450/oxygenase | 24 | 2195 | 7DLH, BR6OX1/CYP85A1, BR6OX2/CYP85A2, C3'H/CYP98A, C4H, CPD/CYP90A1, CYP51G1, CYP71, CYP719, CYP76, CYP80B1, CYP80F1, CYP90D1, DWF4/CYP90B1, F3'5'H/CYP75A, F3'H/CYP75B, F5H/CYP84A, G8O/G8H, IFS, IO, ROT3/CYP90C1, SLS, T16H, T3O |
| BAHD/acyltransferase | 3 | 371 | BAHD, HCT, RAS |
Identification Result List
Search the public protein/isoform identification results for this species; click pathway or family legends above to narrow within this species.
Current family filter: TRI/TRII
| Protein/Isoform Record | Pathway | Family | Confidence | Status | Best Target |
|---|---|---|---|---|---|
| Gher11G0033900.1 | Alkaloid | TRI/TRII | medium | pass | TRI_TRII__00005__sp_P50162_TRN1_DATST |
| Gher11G0033910.1 | Alkaloid | TRI/TRII | low | borderline | TRI_TRII__00008__sp_Q9ZW18_SAG13_ARATH |
| Gher12G0005350.1 | Alkaloid | TRI/TRII | medium | pass | TRI_TRII__00002__sp_H9BFQ0_TPRL1_ERYCB |
| Gher12G0008490.1 | Alkaloid | TRI/TRII | low | borderline | TRI_TRII__00002__sp_H9BFQ0_TPRL1_ERYCB |
| Gher12G0019670.1 | Alkaloid | TRI/TRII | medium | pass | TRI_TRII__00007__sp_Q9ZW16_TRNHA_ARATH |
| Gher13G0001610.1 | Alkaloid | TRI/TRII | medium | pass | TRI_TRII__00003__sp_H9BFQ1_TPRL2_ERYCB |
| Gher13G0004510.1 | Alkaloid | TRI/TRII | low | borderline | TRI_TRII__00007__sp_Q9ZW16_TRNHA_ARATH |
| Gher13G0014070.1 | Alkaloid | TRI/TRII | medium | pass | TRI_TRII__00009__sp_Q9ZW19_TRNHC_ARATH |
| Gher13G0014740.1 | Alkaloid | TRI/TRII | medium | pass | TRI_TRII__00005__sp_P50162_TRN1_DATST |
| Gher13G0028490.1 | Alkaloid | TRI/TRII | medium | pass | TRI_TRII__00001__sp_A7DY56_TRN1_COCOF |
| Gher13G0028500.1 | Alkaloid | TRI/TRII | medium | pass | TRI_TRII__00001__sp_A7DY56_TRN1_COCOF |
| Gher13G0028510.1 | Alkaloid | TRI/TRII | medium | pass | TRI_TRII__00006__sp_Q9ZW03_TRNH3_ARATH |
| Gher13G0028520.1 | Alkaloid | TRI/TRII | medium | pass | TRI_TRII__00008__sp_Q9ZW18_SAG13_ARATH |
| Gher13G0028530.1 | Alkaloid | TRI/TRII | low | borderline | TRI_TRII__00006__sp_Q9ZW03_TRNH3_ARATH |
| Gher13G0028560.1 | Alkaloid | TRI/TRII | medium | pass | TRI_TRII__00008__sp_Q9ZW18_SAG13_ARATH |
| Gher13G0028570.1 | Alkaloid | TRI/TRII | medium | pass | TRI_TRII__00008__sp_Q9ZW18_SAG13_ARATH |
| GherContig11230003550.1 | Alkaloid | TRI/TRII | medium | pass | TRI_TRII__00005__sp_P50162_TRN1_DATST |
| GherContig11280003660.1 | Alkaloid | TRI/TRII | low | borderline | TRI_TRII__00001__sp_A7DY56_TRN1_COCOF |
| GherContig11310004010.1 | Alkaloid | TRI/TRII | medium | pass | TRI_TRII__00004__sp_H9BFQ2_TPRL3_ERYCB |
| GherContig11540005050.1 | Alkaloid | TRI/TRII | medium | pass | TRI_TRII__00003__sp_H9BFQ1_TPRL2_ERYCB |
| GherContig11580005110.1 | Alkaloid | TRI/TRII | low | borderline | TRI_TRII__00006__sp_Q9ZW03_TRNH3_ARATH |
| GherContig13330009460.1 | Alkaloid | TRI/TRII | medium | pass | TRI_TRII__00003__sp_H9BFQ1_TPRL2_ERYCB |