PlantSME Plant secondary metabolism enzyme database

Gossypium herbaceum (gossypium_herbaceum)

Imported from atlas release summary for Gossypium herbaceum.

2126
Candidate Genes
106
Families
6
Pathways
Phylogenetic Position
The current species is positioned within the lineage framework used by this site. Its taxon group is highlighted below.
Species Metadata
Taxon group
Eudicots
Genome status
Genome-level resource available
Site Placement
  • This page summarizes pathway coverage, family distributions, and the gene list for the species within the current public dataset.
  • If you want to start from the public overview first, open the homepage and then return here for species-level drill-down.
  • Family statistics correspond to enzyme families, while pathway statistics correspond to the real category-level pathways.
Family Distribution
More Families (98)
Species Pathway Results
The links below show identification results for this species within each pathway, instead of opening the global pathway overview.
Pathway Candidate Genes Families Top family Results
Terpenoid pathway 638 22 BAHD (210) View species results
Alkaloid pathway 486 25 7DLGT (85) View species results
Phenylpropanoid pathway 451 12 POD (164) View species results
Flavonoid pathway 256 12 UFGT (166) View species results
Rosmarinic acid pathway 171 7 C4H (73) View species results
Steroid pathway 124 11 CAS (63) View species results
Broad Catalytic Groups
P450/oxygenase and BAHD/acyltransferase are counted separately as broad catalytic groups and are not mixed into the canonical enzyme-family count.
Catalytic group Families Candidate genes Included families
P450/oxygenase 24 2195 7DLH, BR6OX1/CYP85A1, BR6OX2/CYP85A2, C3'H/CYP98A, C4H, CPD/CYP90A1, CYP51G1, CYP71, CYP719, CYP76, CYP80B1, CYP80F1, CYP90D1, DWF4/CYP90B1, F3'5'H/CYP75A, F3'H/CYP75B, F5H/CYP84A, G8O/G8H, IFS, IO, ROT3/CYP90C1, SLS, T16H, T3O
BAHD/acyltransferase 3 371 BAHD, HCT, RAS
Identification Result List
Search the public identification results for this species; click pathway or family legends above to narrow within this species.
Current pathway filter: Rosmarinic acid pathway
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Gene Pathway Family Confidence Status
Gher06G0014520.1 Rosmarinic Acid C4H low borderline
Gher06G0018970.1 Rosmarinic Acid C4H low borderline
Gher06G0020560.1 Rosmarinic Acid C4H low borderline
Gher06G0021830.1 Rosmarinic Acid C4H low borderline
Gher06G0022630.1 Rosmarinic Acid C4H low borderline
Gher06G0024490.1 Rosmarinic Acid C4H low borderline
Gher06G0024800.1 Rosmarinic Acid C4H low borderline
Gher06G0027540.1 Rosmarinic Acid C4H low borderline
Gher07G0000260.1 Rosmarinic Acid C4H low borderline
Gher07G0004840.1 Rosmarinic Acid C4H low borderline
Gher07G0006650.1 Rosmarinic Acid C4H low borderline
Gher07G0006670.1 Rosmarinic Acid C4H low borderline
Gher07G0006690.1 Rosmarinic Acid C4H low borderline
Gher07G0006700.1 Rosmarinic Acid C4H medium pass
Gher07G0009230.1 Rosmarinic Acid C4H low borderline
Gher07G0009270.1 Rosmarinic Acid C4H low borderline
Gher07G0009280.1 Rosmarinic Acid C4H medium pass
Gher07G0009420.1 Rosmarinic Acid C4H low borderline
Gher07G0011030.1 Rosmarinic Acid C4H low borderline
Gher07G0011070.1 Rosmarinic Acid C4H low borderline
Gher07G0012020.1 Rosmarinic Acid C4H low borderline
Gher07G0014510.1 Rosmarinic Acid C4H medium pass
Gher07G0014530.1 Rosmarinic Acid C4H medium pass
Gher07G0019800.1 Rosmarinic Acid C4H low borderline
Gher07G0019820.1 Rosmarinic Acid C4H low borderline
Gher07G0023300.1 Rosmarinic Acid C4H low borderline
Gher07G0023910.1 Rosmarinic Acid C4H low borderline
Gher07G0025350.1 Rosmarinic Acid C4H low borderline
Gher07G0025370.1 Rosmarinic Acid C4H low borderline
Gher07G0025430.1 Rosmarinic Acid C4H low borderline
Gher07G0027240.1 Rosmarinic Acid C4H low borderline
Gher08G0000890.1 Rosmarinic Acid C4H low borderline
Gher08G0014560.1 Rosmarinic Acid C4H low borderline
Gher08G0018130.1 Rosmarinic Acid C4H low borderline
Gher08G0018770.1 Rosmarinic Acid C4H low borderline
Gher08G0020260.1 Rosmarinic Acid C4H low borderline
Gher08G0021290.1 Rosmarinic Acid C4H low borderline
Gher08G0021300.1 Rosmarinic Acid C4H low borderline
Gher08G0021310.1 Rosmarinic Acid C4H low borderline
Gher08G0022960.1 Rosmarinic Acid C4H medium pass
Gher08G0022970.1 Rosmarinic Acid C4H low borderline
Gher08G0023250.1 Rosmarinic Acid C4H low borderline
Gher08G0023270.1 Rosmarinic Acid C4H low borderline
Gher08G0023280.1 Rosmarinic Acid C4H medium pass
Gher08G0023310.1 Rosmarinic Acid C4H medium pass
Gher08G0028620.1 Rosmarinic Acid C4H low borderline
Gher08G0030180.1 Rosmarinic Acid C4H low borderline
Gher08G0030870.1 Rosmarinic Acid C4H low borderline
Gher09G0002010.1 Rosmarinic Acid C4H low borderline
Gher09G0002020.1 Rosmarinic Acid C4H medium pass