PlantSME Plant secondary metabolism enzyme database

Gossypium herbaceum (gossypium_herbaceum)

Imported from atlas release summary for Gossypium herbaceum.

2126
Candidate Genes
106
Families
6
Pathways
Phylogenetic Position
The current species is positioned within the lineage framework used by this site. Its taxon group is highlighted below.
Species Metadata
Taxon group
Eudicots
Genome status
Genome-level resource available
Site Placement
  • This page summarizes pathway coverage, family distributions, and the gene list for the species within the current public dataset.
  • If you want to start from the public overview first, open the homepage and then return here for species-level drill-down.
  • Family statistics correspond to enzyme families, while pathway statistics correspond to the real category-level pathways.
Family Distribution
More Families (98)
Species Pathway Results
The links below show identification results for this species within each pathway, instead of opening the global pathway overview.
Pathway Candidate Genes Families Top family Results
Terpenoid pathway 638 22 BAHD (210) View species results
Alkaloid pathway 486 25 7DLGT (85) View species results
Phenylpropanoid pathway 451 12 POD (164) View species results
Flavonoid pathway 256 12 UFGT (166) View species results
Rosmarinic acid pathway 171 7 C4H (73) View species results
Steroid pathway 124 11 CAS (63) View species results
Broad Catalytic Groups
P450/oxygenase and BAHD/acyltransferase are counted separately as broad catalytic groups and are not mixed into the canonical enzyme-family count.
Catalytic group Families Candidate genes Included families
P450/oxygenase 24 2195 7DLH, BR6OX1/CYP85A1, BR6OX2/CYP85A2, C3'H/CYP98A, C4H, CPD/CYP90A1, CYP51G1, CYP71, CYP719, CYP76, CYP80B1, CYP80F1, CYP90D1, DWF4/CYP90B1, F3'5'H/CYP75A, F3'H/CYP75B, F5H/CYP84A, G8O/G8H, IFS, IO, ROT3/CYP90C1, SLS, T16H, T3O
BAHD/acyltransferase 3 371 BAHD, HCT, RAS
Identification Result List
Search the public identification results for this species; click pathway or family legends above to narrow within this species.
Current pathway filter: Rosmarinic acid pathway
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Gene Pathway Family Confidence Status
Gher09G0002030.1 Rosmarinic Acid C4H medium pass
Gher09G0002040.1 Rosmarinic Acid C4H low borderline
Gher09G0006920.1 Rosmarinic Acid C4H low borderline
Gher09G0007690.1 Rosmarinic Acid C4H low borderline
Gher09G0007740.1 Rosmarinic Acid C4H medium pass
Gher09G0007780.1 Rosmarinic Acid C4H medium pass
Gher09G0007790.1 Rosmarinic Acid C4H medium pass
Gher09G0013730.1 Rosmarinic Acid C4H low borderline
Gher09G0016910.1 Rosmarinic Acid C4H medium pass
Gher09G0016930.1 Rosmarinic Acid C4H low borderline
Gher09G0016950.1 Rosmarinic Acid C4H medium pass
Gher09G0018230.1 Rosmarinic Acid C4H medium pass
Gher09G0023020.1 Rosmarinic Acid C4H low borderline
Gher09G0024570.1 Rosmarinic Acid C4H low borderline
Gher09G0024580.1 Rosmarinic Acid C4H low borderline
Gher09G0024600.1 Rosmarinic Acid C4H low borderline
Gher09G0025030.1 Rosmarinic Acid C4H low borderline
Gher09G0025050.1 Rosmarinic Acid C4H low borderline
Gher09G0025240.1 Rosmarinic Acid C4H low borderline
Gher09G0026030.1 Rosmarinic Acid C4H medium pass
Gher09G0026040.1 Rosmarinic Acid C4H medium pass
Gher10G0001490.1 Rosmarinic Acid C4H low borderline
Gher10G0005660.1 Rosmarinic Acid C4H medium pass
Gher10G0005670.1 Rosmarinic Acid C4H low borderline
Gher10G0011200.1 Rosmarinic Acid C4H low borderline
Gher10G0011230.1 Rosmarinic Acid C4H low borderline
Gher10G0011310.1 Rosmarinic Acid C4H low borderline
Gher10G0016860.1 Rosmarinic Acid C4H medium pass
Gher10G0023190.1 Rosmarinic Acid C4H medium pass
Gher10G0023470.1 Rosmarinic Acid C4H low borderline
Gher10G0025650.1 Rosmarinic Acid C4H low borderline
Gher10G0025660.1 Rosmarinic Acid C4H low borderline
Gher10G0025670.1 Rosmarinic Acid C4H low borderline
Gher10G0025680.1 Rosmarinic Acid C4H low borderline
Gher10G0025690.1 Rosmarinic Acid C4H low borderline
Gher10G0025700.1 Rosmarinic Acid C4H low borderline
Gher10G0025710.1 Rosmarinic Acid C4H low borderline
Gher10G0025720.1 Rosmarinic Acid C4H low borderline
Gher10G0026330.1 Rosmarinic Acid C4H low borderline
Gher10G0026460.1 Rosmarinic Acid C4H low borderline
Gher10G0026540.1 Rosmarinic Acid C4H medium pass
Gher10G0026550.1 Rosmarinic Acid C4H medium pass
Gher10G0026560.1 Rosmarinic Acid C4H medium pass
Gher10G0026570.1 Rosmarinic Acid C4H medium pass
Gher10G0026590.1 Rosmarinic Acid C4H medium pass
Gher10G0026610.1 Rosmarinic Acid C4H medium pass
Gher10G0026620.1 Rosmarinic Acid C4H medium pass
Gher10G0029220.1 Rosmarinic Acid C4H low borderline
Gher10G0030510.1 Rosmarinic Acid C4H low borderline
Gher10G0032110.1 Rosmarinic Acid C4H low borderline