PlantSME Plant secondary metabolism enzyme database

Gossypium herbaceum (gossypium_herbaceum)

Imported from atlas release summary for Gossypium herbaceum.

2126
Candidate Genes
106
Families
6
Pathways
Phylogenetic Position
The current species is positioned within the lineage framework used by this site. Its taxon group is highlighted below.
Species Metadata
Taxon group
Eudicots
Genome status
Genome-level resource available
Site Placement
  • This page summarizes pathway coverage, family distributions, and the gene list for the species within the current public dataset.
  • If you want to start from the public overview first, open the homepage and then return here for species-level drill-down.
  • Family statistics correspond to enzyme families, while pathway statistics correspond to the real category-level pathways.
Family Distribution
More Families (98)
Species Pathway Results
The links below show identification results for this species within each pathway, instead of opening the global pathway overview.
Pathway Candidate Genes Families Top family Results
Terpenoid pathway 638 22 BAHD (210) View species results
Alkaloid pathway 486 25 7DLGT (85) View species results
Phenylpropanoid pathway 451 12 POD (164) View species results
Flavonoid pathway 256 12 UFGT (166) View species results
Rosmarinic acid pathway 171 7 C4H (73) View species results
Steroid pathway 124 11 CAS (63) View species results
Broad Catalytic Groups
P450/oxygenase and BAHD/acyltransferase are counted separately as broad catalytic groups and are not mixed into the canonical enzyme-family count.
Catalytic group Families Candidate genes Included families
P450/oxygenase 24 2195 7DLH, BR6OX1/CYP85A1, BR6OX2/CYP85A2, C3'H/CYP98A, C4H, CPD/CYP90A1, CYP51G1, CYP71, CYP719, CYP76, CYP80B1, CYP80F1, CYP90D1, DWF4/CYP90B1, F3'5'H/CYP75A, F3'H/CYP75B, F5H/CYP84A, G8O/G8H, IFS, IO, ROT3/CYP90C1, SLS, T16H, T3O
BAHD/acyltransferase 3 371 BAHD, HCT, RAS
Identification Result List
Search the public identification results for this species; click pathway or family legends above to narrow within this species.
Gene Pathway Family Confidence Status
Gher03G0028000.1 Alkaloid 7DLH medium borderline
Gher03G0028010.1 Alkaloid 7DLH medium pass
Gher03G0028510.1 Alkaloid 7DLH medium borderline
Gher04G0013090.1 Alkaloid 7DLH medium borderline
Gher04G0024920.1 Alkaloid 7DLH medium borderline
Gher04G0024930.1 Alkaloid 7DLH medium borderline
Gher05G0003600.1 Alkaloid 7DLH medium borderline
Gher05G0006890.1 Alkaloid 7DLH medium borderline
Gher05G0021140.1 Alkaloid 7DLH medium borderline
Gher05G0021150.1 Alkaloid 7DLH medium borderline
Gher07G0012400.1 Alkaloid 7DLH medium borderline
Gher07G0023300.1 Alkaloid 7DLH medium borderline
Gher08G0017690.1 Alkaloid 7DLH medium borderline
Gher08G0024200.1 Alkaloid 7DLH medium borderline
Gher08G0030180.1 Alkaloid 7DLH medium borderline
Gher09G0006920.1 Alkaloid 7DLH medium borderline
Gher09G0023020.1 Alkaloid 7DLH medium borderline
Gher10G0001440.1 Alkaloid 7DLH low borderline
Gher10G0011200.1 Alkaloid 7DLH medium borderline
Gher10G0011230.1 Alkaloid 7DLH medium borderline
Gher11G0018600.1 Alkaloid 7DLH medium borderline
Gher11G0025560.1 Alkaloid 7DLH medium borderline
Gher11G0044500.1 Alkaloid 7DLH medium borderline
Gher12G0006130.1 Alkaloid 7DLH medium borderline
Gher12G0013500.1 Alkaloid 7DLH medium borderline
Gher12G0028950.1 Alkaloid 7DLH medium borderline
Gher13G0004320.1 Alkaloid 7DLH medium borderline
Gher13G0004340.1 Alkaloid 7DLH medium borderline
Gher13G0004360.1 Alkaloid 7DLH medium borderline
Gher13G0004380.1 Alkaloid 7DLH medium borderline
Gher13G0004390.1 Alkaloid 7DLH medium borderline
Gher13G0004400.1 Alkaloid 7DLH medium borderline
Gher13G0007560.1 Alkaloid 7DLH medium borderline
Gher13G0007590.1 Alkaloid 7DLH medium borderline
GherContig10250000720.1 Alkaloid 7DLH medium borderline
GherContig9870018650.1 Alkaloid 7DLH medium borderline
Gher01G0011750.1 Alkaloid 8HGO low borderline
Gher01G0024440.1 Alkaloid 8HGO medium borderline
Gher02G0016290.1 Alkaloid 8HGO medium borderline
Gher03G0022470.1 Alkaloid 8HGO medium borderline
Gher03G0022480.1 Alkaloid 8HGO low borderline
Gher03G0022490.1 Alkaloid 8HGO medium pass
Gher03G0022500.1 Alkaloid 8HGO medium pass
Gher03G0022520.1 Alkaloid 8HGO medium borderline
Gher04G0012450.1 Alkaloid 8HGO medium borderline
Gher06G0004220.1 Alkaloid 8HGO medium pass
Gher06G0004230.1 Alkaloid 8HGO medium pass
Gher07G0018960.1 Alkaloid 8HGO medium borderline
Gher07G0026940.1 Alkaloid 8HGO medium borderline
Gher08G0013090.1 Alkaloid 8HGO medium borderline