PlantSME Plant secondary metabolism enzyme database

Gossypium herbaceum (gossypium_herbaceum)

Imported from atlas release summary for Gossypium herbaceum.

2126
Candidate Genes
106
Families
6
Pathways
Phylogenetic Position
The current species is positioned within the lineage framework used by this site. Its taxon group is highlighted below.
Species Metadata
Taxon group
Eudicots
Genome status
Genome-level resource available
Site Placement
  • This page summarizes pathway coverage, family distributions, and the gene list for the species within the current public dataset.
  • If you want to start from the public overview first, open the homepage and then return here for species-level drill-down.
  • Family statistics correspond to enzyme families, while pathway statistics correspond to the real category-level pathways.
Family Distribution
More Families (98)
Species Pathway Results
The links below show identification results for this species within each pathway, instead of opening the global pathway overview.
Pathway Candidate Genes Families Top family Results
Terpenoid pathway 638 22 BAHD (210) View species results
Alkaloid pathway 486 25 7DLGT (85) View species results
Phenylpropanoid pathway 451 12 POD (164) View species results
Flavonoid pathway 256 12 UFGT (166) View species results
Rosmarinic acid pathway 171 7 C4H (73) View species results
Steroid pathway 124 11 CAS (63) View species results
Broad Catalytic Groups
P450/oxygenase and BAHD/acyltransferase are counted separately as broad catalytic groups and are not mixed into the canonical enzyme-family count.
Catalytic group Families Candidate genes Included families
P450/oxygenase 24 2195 7DLH, BR6OX1/CYP85A1, BR6OX2/CYP85A2, C3'H/CYP98A, C4H, CPD/CYP90A1, CYP51G1, CYP71, CYP719, CYP76, CYP80B1, CYP80F1, CYP90D1, DWF4/CYP90B1, F3'5'H/CYP75A, F3'H/CYP75B, F5H/CYP84A, G8O/G8H, IFS, IO, ROT3/CYP90C1, SLS, T16H, T3O
BAHD/acyltransferase 3 371 BAHD, HCT, RAS
Identification Result List
Search the public identification results for this species; click pathway or family legends above to narrow within this species.
Gene Pathway Family Confidence Status
Gher08G0029300.1 Alkaloid 8HGO medium borderline
Gher11G0006660.1 Alkaloid 8HGO medium borderline
Gher11G0006670.1 Alkaloid 8HGO medium borderline
Gher11G0023440.1 Alkaloid 8HGO medium pass
Gher11G0029730.1 Alkaloid 8HGO medium pass
GherContig9080015660.1 Alkaloid 8HGO medium borderline
Gher03G0002280.1 Alkaloid ADC medium pass
Gher04G0021650.1 Alkaloid ADC medium pass
Gher04G0021660.1 Alkaloid ADC medium pass
Gher06G0020870.1 Alkaloid ADC low borderline
Gher13G0014420.1 Alkaloid ADC medium pass
Gher03G0020040.1 Alkaloid BBE medium borderline
Gher03G0028960.1 Alkaloid BBE medium borderline
Gher03G0028970.1 Alkaloid BBE medium borderline
Gher03G0029000.1 Alkaloid BBE low borderline
Gher03G0029010.1 Alkaloid BBE medium borderline
Gher03G0029020.1 Alkaloid BBE medium borderline
Gher03G0029030.1 Alkaloid BBE medium borderline
Gher04G0022910.1 Alkaloid BBE medium borderline
Gher04G0022920.1 Alkaloid BBE medium borderline
Gher04G0022930.1 Alkaloid BBE medium borderline
Gher05G0012130.1 Alkaloid BBE medium borderline
Gher05G0012140.1 Alkaloid BBE medium borderline
Gher06G0025060.1 Alkaloid BBE medium borderline
Gher06G0025070.1 Alkaloid BBE medium borderline
Gher06G0025100.1 Alkaloid BBE medium borderline
Gher07G0002860.1 Alkaloid BBE low borderline
Gher07G0007340.1 Alkaloid BBE medium borderline
Gher07G0007350.1 Alkaloid BBE medium borderline
Gher08G0019340.1 Alkaloid BBE medium borderline
Gher09G0017690.1 Alkaloid BBE low borderline
Gher09G0022860.1 Alkaloid BBE medium borderline
Gher09G0022880.1 Alkaloid BBE medium borderline
Gher09G0026140.1 Alkaloid BBE medium borderline
Gher10G0000610.1 Alkaloid BBE medium borderline
Gher10G0000620.1 Alkaloid BBE medium borderline
Gher10G0000630.1 Alkaloid BBE medium borderline
Gher10G0000640.1 Alkaloid BBE medium borderline
Gher10G0000650.1 Alkaloid BBE medium borderline
Gher10G0000660.1 Alkaloid BBE medium borderline
Gher10G0000670.1 Alkaloid BBE medium borderline
Gher10G0000690.1 Alkaloid BBE medium borderline
Gher10G0000700.1 Alkaloid BBE medium borderline
Gher10G0000710.1 Alkaloid BBE medium borderline
Gher10G0008450.1 Alkaloid BBE low borderline
Gher10G0012020.1 Alkaloid BBE medium borderline
Gher10G0014570.1 Alkaloid BBE medium borderline
Gher10G0015460.1 Alkaloid BBE medium borderline
Gher10G0017250.1 Alkaloid BBE medium borderline
Gher11G0001150.1 Alkaloid BBE medium borderline