PlantSME Plant secondary metabolism enzyme database

Gossypium herbaceum (gossypium_herbaceum)

Imported from atlas release summary for Gossypium herbaceum.

2554
Candidate Protein Records
2126
Pathway-Level Records
5491
Family-Level Calls
Phylogenetic Position
The current species is positioned within the lineage framework used by this site. Its taxon group is highlighted below.
Species Metadata
Taxon group
Eudicots
Genome status
Genome-level resource available
Site Placement
  • This page summarizes pathway coverage, family distributions, and protein/isoform records for the species within the current public dataset.
  • If you want to start from the public overview first, open the homepage and then return here for species-level drill-down.
  • Family statistics correspond to enzyme families, while pathway statistics correspond to the real category-level pathways.
  • Download candidate protein FASTA for this species
Family Distribution
More Families (98)
Species Pathway Results
The links below show identification results for this species within each pathway, instead of opening the global pathway overview.
Pathway Pathway-Level Records Detected Families Top family Results
Terpenoid pathway 638 22 BAHD (210) View species results
Alkaloid pathway 486 25 7DLGT (85) View species results
Phenylpropanoid pathway 451 12 POD (164) View species results
Flavonoid pathway 256 12 UFGT (166) View species results
Rosmarinic acid pathway 171 7 C4H (73) View species results
Steroid pathway 124 11 CAS (63) View species results
Broad Catalytic Groups
P450/oxygenase and BAHD/acyltransferase are counted separately as broad catalytic groups and are not mixed into the canonical enzyme-family count.
Catalytic group Detected families Assignment calls Included families
P450/oxygenase 24 2195 7DLH, BR6OX1/CYP85A1, BR6OX2/CYP85A2, C3'H/CYP98A, C4H, CPD/CYP90A1, CYP51G1, CYP71, CYP719, CYP76, CYP80B1, CYP80F1, CYP90D1, DWF4/CYP90B1, F3'5'H/CYP75A, F3'H/CYP75B, F5H/CYP84A, G8O/G8H, IFS, IO, ROT3/CYP90C1, SLS, T16H, T3O
BAHD/acyltransferase 3 371 BAHD, HCT, RAS
Identification Result List
Search the public protein/isoform identification results for this species; click pathway or family legends above to narrow within this species.
Protein/Isoform Record Pathway Family Confidence Status
Gher11G0001160.1 Alkaloid BBE medium borderline
Gher11G0001170.1 Alkaloid BBE medium borderline
Gher11G0001180.1 Alkaloid BBE medium borderline
Gher11G0001190.1 Alkaloid BBE medium borderline
Gher12G0032090.1 Alkaloid BBE medium borderline
Gher12G0032100.1 Alkaloid BBE medium borderline
Gher12G0032110.1 Alkaloid BBE medium borderline
Gher12G0032120.1 Alkaloid BBE medium borderline
Gher12G0032130.1 Alkaloid BBE medium borderline
Gher13G0002310.1 Alkaloid BBE low borderline
GherContig6420012890.1 Alkaloid BBE medium borderline
GherContig9340016840.1 Alkaloid BBE medium borderline
Gher01G0022430.1 Alkaloid CNMT low borderline
Gher01G0022460.1 Alkaloid CNMT low borderline
Gher02G0021600.1 Alkaloid CNMT low borderline
Gher03G0025640.1 Alkaloid CNMT medium pass
Gher03G0025650.1 Alkaloid CNMT medium pass
Gher04G0001230.1 Alkaloid CNMT low borderline
Gher04G0020840.1 Alkaloid CNMT low borderline
Gher05G0004360.1 Alkaloid CNMT medium borderline
Gher05G0004370.1 Alkaloid CNMT medium borderline
Gher07G0005660.1 Alkaloid CNMT low borderline
Gher07G0008870.1 Alkaloid CNMT low borderline
Gher10G0016060.1 Alkaloid CNMT medium pass
Gher11G0019150.1 Alkaloid CNMT low borderline
Gher01G0000570.1 Alkaloid CODM/T6ODM medium borderline
Gher01G0000580.1 Alkaloid CODM/T6ODM medium borderline
Gher01G0003330.1 Alkaloid CODM/T6ODM medium borderline
Gher01G0003840.1 Alkaloid CODM/T6ODM medium borderline
Gher01G0003860.1 Alkaloid CODM/T6ODM medium borderline
Gher01G0003880.1 Alkaloid CODM/T6ODM medium borderline
Gher01G0003900.1 Alkaloid CODM/T6ODM medium borderline
Gher01G0003910.1 Alkaloid CODM/T6ODM medium borderline
Gher01G0003920.1 Alkaloid CODM/T6ODM medium borderline
Gher01G0004100.1 Alkaloid CODM/T6ODM medium borderline
Gher01G0004650.1 Alkaloid CODM/T6ODM medium borderline
Gher01G0004660.1 Alkaloid CODM/T6ODM medium borderline
Gher01G0006210.1 Alkaloid CODM/T6ODM medium borderline
Gher01G0008040.1 Alkaloid CODM/T6ODM medium borderline
Gher01G0015500.1 Alkaloid CODM/T6ODM medium borderline
Gher01G0027550.1 Alkaloid CODM/T6ODM medium borderline
Gher01G0028810.1 Alkaloid CODM/T6ODM medium borderline
Gher03G0012610.1 Alkaloid CODM/T6ODM medium borderline
Gher03G0013270.1 Alkaloid CODM/T6ODM medium borderline
Gher03G0025430.1 Alkaloid CODM/T6ODM medium borderline
Gher03G0026040.1 Alkaloid CODM/T6ODM medium borderline
Gher03G0026080.1 Alkaloid CODM/T6ODM medium borderline
Gher03G0026100.1 Alkaloid CODM/T6ODM medium borderline
Gher03G0026110.1 Alkaloid CODM/T6ODM medium borderline
Gher04G0008800.1 Alkaloid CODM/T6ODM medium borderline