PlantSME Plant secondary metabolism enzyme database

Grimmia obtusifolia (grimmia_obtusifolia)

Imported from atlas release summary for Grimmia obtusifolia.

634
Candidate Genes
102
Families
6
Pathways
Phylogenetic Position
The current species is positioned within the lineage framework used by this site. Its taxon group is highlighted below.
Algae
Site group 29
Bryophytes
Current group 125
Lycophytes/Ferns
Site group 4
Gymnosperms
Site group 6
Basal angiosperms
Site group 13
Monocots
Site group 117
Eudicots
Site group 495
Species Metadata
Taxon group
Bryophytes
Genome status
Genome-level resource available
Site Placement
  • This page summarizes pathway coverage, family distributions, and the gene list for the species within the current public dataset.
  • If you want to start from the public overview first, open the homepage and then return here for species-level drill-down.
  • Family statistics correspond to enzyme families, while pathway statistics correspond to the real category-level pathways.
Pathway Coverage
Phenylpropanoid pathway 26.81% Terpenoid pathway 24.13% Alkaloid pathway 20.82% Flavonoid pathway 12.62% Rosmarinic acid pathway 9.46% Steroid pathway 6.15%
Family Distribution
C4H 7.21% C3'H/CYP98A 5.84% BAHD 5.72% POD 5.36% 4CL 5.01% CYP76 4.05% NMT 3.75% IFS 3.34%
Other Families 59.71%
More Families (94)
T3O 41 2.44% STR 41 2.44% DWF4/CYP90B1 41 2.44% F3H 40 2.38% IFR 40 2.38% F3'H/CYP75B 35 2.09% BR6OX2/CYP85A2 34 2.03% PAL 30 1.79% UGT 30 1.79% GS 29 1.73% CODM/T6ODM 28 1.67% 7DLGT 28 1.67% UFGT 28 1.67% PYKS 27 1.61% IO 24 1.43% CYP71 21 1.25% CAD 19 1.13% H6H 18 1.07% SMT1/SMT2/SMT3 18 1.07% CHS 17 1.01% T16H 15 0.89% TRI/TRII 15 0.89% F3'5'H/CYP75A 15 0.89% HCT 15 0.89% LAC 15 0.89% RAS 15 0.89% COMT 14 0.83% G8O/G8H 13 0.77% SLS 13 0.77% CAS 12 0.72% CNMT 11 0.66% CSE 11 0.66% SGD 10 0.6% FNS 10 0.6% 7DLH 9 0.54% 8HGO 9 0.54% CCR 9 0.54% COR 8 0.48% 16OMT 8 0.48% ANR 8 0.48% CYP90D1 8 0.48% NCS 7 0.42% TDC 7 0.42% SQS/FDFT1 7 0.42% PMT 6 0.36% DET2 6 0.36% CPD/CYP90A1 6 0.36% MVK 6 0.36% AACT 6 0.36% CYP80B1 5 0.3% ANS/LDOX 5 0.3% F5H/CYP84A 5 0.3% CPR 5 0.3% BR6OX1/CYP85A1 5 0.3% GGPPS 5 0.3% LAMT 4 0.24% CYP719 4 0.24% BBE 4 0.24% ADC 4 0.24% FLS 4 0.24% TAT 4 0.24% DWF5 4 0.24% SQE 4 0.24% ROT3/CYP90C1 4 0.24% MPO 3 0.18% DFR 3 0.18% CHI 3 0.18% SMO1/SMO2 3 0.18% MVD 3 0.18% 6OMT_4OMT_SOMT 2 0.12% ISY 2 0.12% TYDC_DDC 2 0.12% CCoAOMT 2 0.12% HPPR 2 0.12% CYP51G1 2 0.12% HYD1 2 0.12% FPPS 2 0.12% HDS/IspG 2 0.12% MCT/IspD 2 0.12% DXR 2 0.12% MDS/IspF 2 0.12% HDR/IspH 2 0.12% GES 1 0.06% DWF7 1 0.06% DWF1 1 0.06% CPI1 1 0.06% FK 1 0.06% IDI 1 0.06% CMK/IspE 1 0.06% TPS 1 0.06% DXS 1 0.06% HMGR 1 0.06% PMK 1 0.06% HMGS 1 0.06%
Species Pathway Results
The links below show identification results for this species within each pathway, instead of opening the global pathway overview.
Pathway Candidate Genes Families Top family Results
Phenylpropanoid pathway 170 11 POD (85) View species results
Terpenoid pathway 153 19 BAHD (60) View species results
Alkaloid pathway 132 16 NMT (22) View species results
Flavonoid pathway 80 9 UFGT (23) View species results
Rosmarinic acid pathway 60 7 C4H (19) View species results
Steroid pathway 39 13 CAS (9) View species results
Broad Catalytic Groups
P450/oxygenase and BAHD/acyltransferase are counted separately as broad catalytic groups and are not mixed into the canonical enzyme-family count.
Catalytic group Families Candidate genes Included families
P450/oxygenase 23 643 7DLH, BR6OX1/CYP85A1, BR6OX2/CYP85A2, C3'H/CYP98A, C4H, CPD/CYP90A1, CYP51G1, CYP71, CYP719, CYP76, CYP80B1, CYP90D1, DWF4/CYP90B1, F3'5'H/CYP75A, F3'H/CYP75B, F5H/CYP84A, G8O/G8H, IFS, IO, ROT3/CYP90C1, SLS, T16H, T3O
BAHD/acyltransferase 3 126 BAHD, HCT, RAS
Identification Result List
Search the public identification results for this species; click pathway or family legends above to narrow within this species.
Current family filter: NMT
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Gene Pathway Family Confidence Status Best Target
GobtHiC_scaffold_70243010 Alkaloid NMT low borderline NMT__00028__sp_Q2LAE1_ASHH2_ARATH
GobtHiC_scaffold_80251930 Alkaloid NMT medium pass NMT__00066__sp_Q9SU94_ANM11_ARATH
GobtHiC_scaffold_80253040 Alkaloid NMT low borderline NMT__00028__sp_Q2LAE1_ASHH2_ARATH
GobtHiC_scaffold_80254840 Alkaloid NMT low borderline NMT__00024__sp_P0CB22_ATX2_ARATH
GobtHiC_scaffold_80255070 Alkaloid NMT low borderline NMT__00024__sp_P0CB22_ATX2_ARATH
GobtHiC_scaffold_80257000 Alkaloid NMT medium borderline NMT__00070__sp_W5U2K2_NMT_CATRO
GobtHiC_scaffold_80263970 Alkaloid NMT medium pass NMT__00041__sp_Q8GWT4_ANM15_ARATH
GobtHiC_scaffold_80266110 Alkaloid NMT medium borderline NMT__00053__sp_Q9C6B9_PEAM3_ARATH
GobtHiC_scaffold_8370276660 Alkaloid NMT medium pass NMT__00056__sp_Q9FNE9_ATXR6_ARATH
GobtHiC_scaffold_8370276680 Alkaloid NMT medium pass NMT__00056__sp_Q9FNE9_ATXR6_ARATH
GobtHiC_scaffold_90280160 Alkaloid NMT medium pass NMT__00035__sp_Q6K431_TRX1_ORYSJ
GobtHiC_scaffold_90282560 Alkaloid NMT low borderline NMT__00056__sp_Q9FNE9_ATXR6_ARATH
GobtHiC_scaffold_90295690 Alkaloid NMT medium borderline NMT__00052__sp_Q9AVJ9_MXMT1_COFAR