Grimmia obtusifolia (grimmia_obtusifolia)
Imported from atlas release summary for Grimmia obtusifolia.
634
Candidate Genes
102
Families
6
Pathways
Phylogenetic Position
The current species is positioned within the lineage framework used by this site. Its taxon group is highlighted below.
Species Metadata
Taxon group
Bryophytes
Genome status
Genome-level resource available
Site Placement
- This page summarizes pathway coverage, family distributions, and the gene list for the species within the current public dataset.
- If you want to start from the public overview first, open the homepage and then return here for species-level drill-down.
- Family statistics correspond to enzyme families, while pathway statistics correspond to the real category-level pathways.
Pathway Coverage
6
Pathways
Family Distribution
634
Candidate Genes
C4H
7.21%
C3'H/CYP98A
5.84%
BAHD
5.72%
POD
5.36%
4CL
5.01%
CYP76
4.05%
NMT
3.75%
IFS
3.34%
Other Families
59.71%
More Families (94)
T3O
41
2.44%
STR
41
2.44%
DWF4/CYP90B1
41
2.44%
F3H
40
2.38%
IFR
40
2.38%
F3'H/CYP75B
35
2.09%
BR6OX2/CYP85A2
34
2.03%
PAL
30
1.79%
UGT
30
1.79%
GS
29
1.73%
CODM/T6ODM
28
1.67%
7DLGT
28
1.67%
UFGT
28
1.67%
PYKS
27
1.61%
IO
24
1.43%
CYP71
21
1.25%
CAD
19
1.13%
H6H
18
1.07%
SMT1/SMT2/SMT3
18
1.07%
CHS
17
1.01%
T16H
15
0.89%
TRI/TRII
15
0.89%
F3'5'H/CYP75A
15
0.89%
HCT
15
0.89%
LAC
15
0.89%
RAS
15
0.89%
COMT
14
0.83%
G8O/G8H
13
0.77%
SLS
13
0.77%
CAS
12
0.72%
CNMT
11
0.66%
CSE
11
0.66%
SGD
10
0.6%
FNS
10
0.6%
7DLH
9
0.54%
8HGO
9
0.54%
CCR
9
0.54%
COR
8
0.48%
16OMT
8
0.48%
ANR
8
0.48%
CYP90D1
8
0.48%
NCS
7
0.42%
TDC
7
0.42%
SQS/FDFT1
7
0.42%
PMT
6
0.36%
DET2
6
0.36%
CPD/CYP90A1
6
0.36%
MVK
6
0.36%
AACT
6
0.36%
CYP80B1
5
0.3%
ANS/LDOX
5
0.3%
F5H/CYP84A
5
0.3%
CPR
5
0.3%
BR6OX1/CYP85A1
5
0.3%
GGPPS
5
0.3%
LAMT
4
0.24%
CYP719
4
0.24%
BBE
4
0.24%
ADC
4
0.24%
FLS
4
0.24%
TAT
4
0.24%
DWF5
4
0.24%
SQE
4
0.24%
ROT3/CYP90C1
4
0.24%
MPO
3
0.18%
DFR
3
0.18%
CHI
3
0.18%
SMO1/SMO2
3
0.18%
MVD
3
0.18%
6OMT_4OMT_SOMT
2
0.12%
ISY
2
0.12%
TYDC_DDC
2
0.12%
CCoAOMT
2
0.12%
HPPR
2
0.12%
CYP51G1
2
0.12%
HYD1
2
0.12%
FPPS
2
0.12%
HDS/IspG
2
0.12%
MCT/IspD
2
0.12%
DXR
2
0.12%
MDS/IspF
2
0.12%
HDR/IspH
2
0.12%
GES
1
0.06%
DWF7
1
0.06%
DWF1
1
0.06%
CPI1
1
0.06%
FK
1
0.06%
IDI
1
0.06%
CMK/IspE
1
0.06%
TPS
1
0.06%
DXS
1
0.06%
HMGR
1
0.06%
PMK
1
0.06%
HMGS
1
0.06%
Species Pathway Results
The links below show identification results for this species within each pathway, instead of opening the global pathway overview.
| Pathway | Candidate Genes | Families | Top family | Results |
|---|---|---|---|---|
| Phenylpropanoid pathway | 170 | 11 | POD (85) | View species results |
| Terpenoid pathway | 153 | 19 | BAHD (60) | View species results |
| Alkaloid pathway | 132 | 16 | NMT (22) | View species results |
| Flavonoid pathway | 80 | 9 | UFGT (23) | View species results |
| Rosmarinic acid pathway | 60 | 7 | C4H (19) | View species results |
| Steroid pathway | 39 | 13 | CAS (9) | View species results |
Broad Catalytic Groups
P450/oxygenase and BAHD/acyltransferase are counted separately as broad catalytic groups and are not mixed into the canonical enzyme-family count.
| Catalytic group | Families | Candidate genes | Included families |
|---|---|---|---|
| P450/oxygenase | 23 | 643 | 7DLH, BR6OX1/CYP85A1, BR6OX2/CYP85A2, C3'H/CYP98A, C4H, CPD/CYP90A1, CYP51G1, CYP71, CYP719, CYP76, CYP80B1, CYP90D1, DWF4/CYP90B1, F3'5'H/CYP75A, F3'H/CYP75B, F5H/CYP84A, G8O/G8H, IFS, IO, ROT3/CYP90C1, SLS, T16H, T3O |
| BAHD/acyltransferase | 3 | 126 | BAHD, HCT, RAS |
Identification Result List
Search the public identification results for this species; click pathway or family legends above to narrow within this species.
Current family filter: STR
| Gene | Pathway | Family | Confidence | Status | Best Target |
|---|---|---|---|---|---|
| GobtHiC_scaffold_100022880 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| GobtHiC_scaffold_100024030 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| GobtHiC_scaffold_100028410 | Alkaloid | STR | medium | pass | STR__00003__sp_Q9M1B4_SSL13_ARATH |
| GobtHiC_scaffold_100030020 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| GobtHiC_scaffold_100033120 | Alkaloid | STR | medium | pass | STR__00003__sp_Q9M1B4_SSL13_ARATH |
| GobtHiC_scaffold_100036310 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| GobtHiC_scaffold_100036430 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| GobtHiC_scaffold_100041610 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| GobtHiC_scaffold_10010550 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| GobtHiC_scaffold_10016090 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| GobtHiC_scaffold_10020730 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| GobtHiC_scaffold_110054280 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| GobtHiC_scaffold_110054290 | Alkaloid | STR | medium | pass | STR__00001__sp_D3GE74_STR1_MEDTR |
| GobtHiC_scaffold_120065010 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| GobtHiC_scaffold_120069260 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| GobtHiC_scaffold_120077160 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| GobtHiC_scaffold_130080880 | Alkaloid | STR | medium | pass | STR__00003__sp_Q9M1B4_SSL13_ARATH |
| GobtHiC_scaffold_20106950 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| GobtHiC_scaffold_20121760 | Alkaloid | STR | medium | pass | STR__00001__sp_D3GE74_STR1_MEDTR |
| GobtHiC_scaffold_210128610 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| GobtHiC_scaffold_30135290 | Alkaloid | STR | medium | pass | STR__00003__sp_Q9M1B4_SSL13_ARATH |
| GobtHiC_scaffold_30135800 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| GobtHiC_scaffold_30139620 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| GobtHiC_scaffold_30142440 | Alkaloid | STR | medium | pass | STR__00001__sp_D3GE74_STR1_MEDTR |
| GobtHiC_scaffold_30147470 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| GobtHiC_scaffold_30156470 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| GobtHiC_scaffold_40164180 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| GobtHiC_scaffold_40177350 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| GobtHiC_scaffold_60208340 | Alkaloid | STR | medium | pass | STR__00001__sp_D3GE74_STR1_MEDTR |
| GobtHiC_scaffold_70219480 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| GobtHiC_scaffold_70222660 | Alkaloid | STR | medium | pass | STR__00003__sp_Q9M1B4_SSL13_ARATH |
| GobtHiC_scaffold_70227490 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| GobtHiC_scaffold_70228630 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| GobtHiC_scaffold_80254470 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| GobtHiC_scaffold_80261150 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| GobtHiC_scaffold_80264620 | Alkaloid | STR | medium | pass | STR__00003__sp_Q9M1B4_SSL13_ARATH |
| GobtHiC_scaffold_80270180 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| GobtHiC_scaffold_80275040 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| GobtHiC_scaffold_90280710 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| GobtHiC_scaffold_90282600 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| GobtHiC_scaffold_90294250 | Alkaloid | STR | medium | pass | STR__00003__sp_Q9M1B4_SSL13_ARATH |