Grimmia obtusifolia (grimmia_obtusifolia)

This page summarizes pathway coverage, family distributions, and the gene list for the species within the current public dataset.
If you want to start from the public overview first, open the homepage and then return here for species-level drill-down.
Family statistics correspond to enzyme families, while pathway statistics correspond to the real category-level pathways.

Pathway Coverage

6 Pathways

Phenylpropanoid pathway 26.81% Terpenoid pathway 24.13% Alkaloid pathway 20.82% Flavonoid pathway 12.62% Rosmarinic acid pathway 9.46% Steroid pathway 6.15%

Family Distribution

634 Candidate Genes

C4H 7.21% C3'H/CYP98A 5.84% BAHD 5.72% POD 5.36% 4CL 5.01% CYP76 4.05% NMT 3.75% IFS 3.34%

Other Families 59.71%

More Families (94)

T3O 41 2.44% STR 41 2.44% DWF4/CYP90B1 41 2.44% F3H 40 2.38% IFR 40 2.38% F3'H/CYP75B 35 2.09% BR6OX2/CYP85A2 34 2.03% PAL 30 1.79% UGT 30 1.79% GS 29 1.73% CODM/T6ODM 28 1.67% 7DLGT 28 1.67% UFGT 28 1.67% PYKS 27 1.61% IO 24 1.43% CYP71 21 1.25% CAD 19 1.13% H6H 18 1.07% SMT1/SMT2/SMT3 18 1.07% CHS 17 1.01% T16H 15 0.89% TRI/TRII 15 0.89% F3'5'H/CYP75A 15 0.89% HCT 15 0.89% LAC 15 0.89% RAS 15 0.89% COMT 14 0.83% G8O/G8H 13 0.77% SLS 13 0.77% CAS 12 0.72% CNMT 11 0.66% CSE 11 0.66% SGD 10 0.6% FNS 10 0.6% 7DLH 9 0.54% 8HGO 9 0.54% CCR 9 0.54% COR 8 0.48% 16OMT 8 0.48% ANR 8 0.48% CYP90D1 8 0.48% NCS 7 0.42% TDC 7 0.42% SQS/FDFT1 7 0.42% PMT 6 0.36% DET2 6 0.36% CPD/CYP90A1 6 0.36% MVK 6 0.36% AACT 6 0.36% CYP80B1 5 0.3% ANS/LDOX 5 0.3% F5H/CYP84A 5 0.3% CPR 5 0.3% BR6OX1/CYP85A1 5 0.3% GGPPS 5 0.3% LAMT 4 0.24% CYP719 4 0.24% BBE 4 0.24% ADC 4 0.24% FLS 4 0.24% TAT 4 0.24% DWF5 4 0.24% SQE 4 0.24% ROT3/CYP90C1 4 0.24% MPO 3 0.18% DFR 3 0.18% CHI 3 0.18% SMO1/SMO2 3 0.18% MVD 3 0.18% 6OMT_4OMT_SOMT 2 0.12% ISY 2 0.12% TYDC_DDC 2 0.12% CCoAOMT 2 0.12% HPPR 2 0.12% CYP51G1 2 0.12% HYD1 2 0.12% FPPS 2 0.12% HDS/IspG 2 0.12% MCT/IspD 2 0.12% DXR 2 0.12% MDS/IspF 2 0.12% HDR/IspH 2 0.12% GES 1 0.06% DWF7 1 0.06% DWF1 1 0.06% CPI1 1 0.06% FK 1 0.06% IDI 1 0.06% CMK/IspE 1 0.06% TPS 1 0.06% DXS 1 0.06% HMGR 1 0.06% PMK 1 0.06% HMGS 1 0.06%

Species Pathway Results

The links below show identification results for this species within each pathway, instead of opening the global pathway overview.

Pathway	Candidate Genes	Families	Top family	Results
Phenylpropanoid pathway	170	11	POD (85)	View species results
Terpenoid pathway	153	19	BAHD (60)	View species results
Alkaloid pathway	132	16	NMT (22)	View species results
Flavonoid pathway	80	9	UFGT (23)	View species results
Rosmarinic acid pathway	60	7	C4H (19)	View species results
Steroid pathway	39	13	CAS (9)	View species results

Broad Catalytic Groups

P450/oxygenase and BAHD/acyltransferase are counted separately as broad catalytic groups and are not mixed into the canonical enzyme-family count.

Catalytic group	Families	Candidate genes	Included families
P450/oxygenase	23	643	7DLH, BR6OX1/CYP85A1, BR6OX2/CYP85A2, C3'H/CYP98A, C4H, CPD/CYP90A1, CYP51G1, CYP71, CYP719, CYP76, CYP80B1, CYP90D1, DWF4/CYP90B1, F3'5'H/CYP75A, F3'H/CYP75B, F5H/CYP84A, G8O/G8H, IFS, IO, ROT3/CYP90C1, SLS, T16H, T3O
BAHD/acyltransferase	3	126	BAHD, HCT, RAS

Identification Result List

Search the public identification results for this species; click pathway or family legends above to narrow within this species.

Current family filter: PAL

Gene	Pathway	Family	Confidence	Status	Best Target
GobtHiC_scaffold_10020350	Flavonoid	PAL	high	pass	PAL__00001__sp_P24481_PAL1_PETCR
GobtHiC_scaffold_110045280	Flavonoid	PAL	high	pass	PAL__00009__sp_Q9SS45_PAL4_ARATH
GobtHiC_scaffold_30151730	Flavonoid	PAL	high	pass	PAL__00001__sp_P24481_PAL1_PETCR
GobtHiC_scaffold_50191080	Flavonoid	PAL	low	borderline	PAL__00007__sp_Q6GZ04_PAM_TAXCA
GobtHiC_scaffold_70220470	Flavonoid	PAL	high	pass	PAL__00009__sp_Q9SS45_PAL4_ARATH
GobtHiC_scaffold_70244360	Flavonoid	PAL	high	pass	PAL__00009__sp_Q9SS45_PAL4_ARATH
GobtHiC_scaffold_70244390	Flavonoid	PAL	high	pass	PAL__00001__sp_P24481_PAL1_PETCR
GobtHiC_scaffold_70248010	Flavonoid	PAL	medium	pass	PAL__00001__sp_P24481_PAL1_PETCR
GobtHiC_scaffold_80256300	Flavonoid	PAL	high	pass	PAL__00001__sp_P24481_PAL1_PETCR
GobtHiC_scaffold_80270000	Flavonoid	PAL	high	pass	PAL__00009__sp_Q9SS45_PAL4_ARATH
GobtHiC_scaffold_10020350	Phenylpropanoid	PAL	high	pass	PAL__00001__sp_P24481_PAL1_PETCR
GobtHiC_scaffold_110045280	Phenylpropanoid	PAL	high	pass	PAL__00009__sp_Q9SS45_PAL4_ARATH
GobtHiC_scaffold_30151730	Phenylpropanoid	PAL	high	pass	PAL__00001__sp_P24481_PAL1_PETCR
GobtHiC_scaffold_50191080	Phenylpropanoid	PAL	low	borderline	PAL__00007__sp_Q6GZ04_PAM_TAXCA
GobtHiC_scaffold_70220470	Phenylpropanoid	PAL	high	pass	PAL__00009__sp_Q9SS45_PAL4_ARATH
GobtHiC_scaffold_70244360	Phenylpropanoid	PAL	high	pass	PAL__00009__sp_Q9SS45_PAL4_ARATH
GobtHiC_scaffold_70244390	Phenylpropanoid	PAL	high	pass	PAL__00001__sp_P24481_PAL1_PETCR
GobtHiC_scaffold_70248010	Phenylpropanoid	PAL	medium	pass	PAL__00001__sp_P24481_PAL1_PETCR
GobtHiC_scaffold_80256300	Phenylpropanoid	PAL	high	pass	PAL__00001__sp_P24481_PAL1_PETCR
GobtHiC_scaffold_80270000	Phenylpropanoid	PAL	high	pass	PAL__00009__sp_Q9SS45_PAL4_ARATH
GobtHiC_scaffold_10020350	Rosmarinic Acid	PAL	high	pass	PAL__00001__sp_P24481_PAL1_PETCR
GobtHiC_scaffold_110045280	Rosmarinic Acid	PAL	high	pass	PAL__00009__sp_Q9SS45_PAL4_ARATH
GobtHiC_scaffold_30151730	Rosmarinic Acid	PAL	high	pass	PAL__00001__sp_P24481_PAL1_PETCR
GobtHiC_scaffold_50191080	Rosmarinic Acid	PAL	low	borderline	PAL__00007__sp_Q6GZ04_PAM_TAXCA
GobtHiC_scaffold_70220470	Rosmarinic Acid	PAL	high	pass	PAL__00009__sp_Q9SS45_PAL4_ARATH
GobtHiC_scaffold_70244360	Rosmarinic Acid	PAL	high	pass	PAL__00009__sp_Q9SS45_PAL4_ARATH
GobtHiC_scaffold_70244390	Rosmarinic Acid	PAL	high	pass	PAL__00001__sp_P24481_PAL1_PETCR
GobtHiC_scaffold_70248010	Rosmarinic Acid	PAL	medium	pass	PAL__00001__sp_P24481_PAL1_PETCR
GobtHiC_scaffold_80256300	Rosmarinic Acid	PAL	high	pass	PAL__00001__sp_P24481_PAL1_PETCR
GobtHiC_scaffold_80270000	Rosmarinic Acid	PAL	high	pass	PAL__00009__sp_Q9SS45_PAL4_ARATH