PlantSME Plant secondary metabolism enzyme database

Grimmia obtusifolia (grimmia_obtusifolia)

Imported from atlas release summary for Grimmia obtusifolia.

903
Candidate Protein Records
634
Pathway-Level Records
1678
Family-Level Calls
Phylogenetic Position
The current species is positioned within the lineage framework used by this site. Its taxon group is highlighted below.
Species Metadata
Taxon group
Bryophytes
Genome status
Genome-level resource available
Site Placement
  • This page summarizes pathway coverage, family distributions, and protein/isoform records for the species within the current public dataset.
  • If you want to start from the public overview first, open the homepage and then return here for species-level drill-down.
  • Family statistics correspond to enzyme families, while pathway statistics correspond to the real category-level pathways.
  • Download candidate protein FASTA for this species
Family Distribution
More Families (94)
Species Pathway Results
The links below show identification results for this species within each pathway, instead of opening the global pathway overview.
Pathway Pathway-Level Records Detected Families Top family Results
Phenylpropanoid pathway 170 11 POD (85) View species results
Terpenoid pathway 153 19 BAHD (60) View species results
Alkaloid pathway 132 16 NMT (22) View species results
Flavonoid pathway 80 9 UFGT (23) View species results
Rosmarinic acid pathway 60 7 C4H (19) View species results
Steroid pathway 39 13 CAS (9) View species results
Broad Catalytic Groups
P450/oxygenase and BAHD/acyltransferase are counted separately as broad catalytic groups and are not mixed into the canonical enzyme-family count.
Catalytic group Detected families Assignment calls Included families
P450/oxygenase 23 643 7DLH, BR6OX1/CYP85A1, BR6OX2/CYP85A2, C3'H/CYP98A, C4H, CPD/CYP90A1, CYP51G1, CYP71, CYP719, CYP76, CYP80B1, CYP90D1, DWF4/CYP90B1, F3'5'H/CYP75A, F3'H/CYP75B, F5H/CYP84A, G8O/G8H, IFS, IO, ROT3/CYP90C1, SLS, T16H, T3O
BAHD/acyltransferase 3 126 BAHD, HCT, RAS
Identification Result List
Search the public protein/isoform identification results for this species; click pathway or family legends above to narrow within this species.
Current pathway filter: Alkaloid pathway
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Protein/Isoform Record Pathway Family Confidence Status
GobtHiC_scaffold_70244470 Alkaloid IO medium borderline
GobtHiC_scaffold_80257630 Alkaloid IO medium borderline
GobtHiC_scaffold_90286980 Alkaloid IO medium borderline
GobtHiC_scaffold_90291480 Alkaloid IO low borderline
GobtHiC_scaffold_90302000 Alkaloid IO medium borderline
GobtHiC_scaffold_140089330 Alkaloid ISY medium pass
GobtHiC_scaffold_40172130 Alkaloid ISY medium pass
GobtHiC_scaffold_100022260 Alkaloid LAMT low borderline
GobtHiC_scaffold_100038460 Alkaloid LAMT medium borderline
GobtHiC_scaffold_20126410 Alkaloid LAMT medium borderline
GobtHiC_scaffold_90295310 Alkaloid LAMT low borderline
GobtHiC_scaffold_20120070 Alkaloid MPO high pass
GobtHiC_scaffold_60209520 Alkaloid MPO high pass
GobtHiC_scaffold_80253350 Alkaloid MPO medium pass
GobtHiC_scaffold_100033600 Alkaloid NCS medium borderline
GobtHiC_scaffold_10004320 Alkaloid NCS medium borderline
GobtHiC_scaffold_20120800 Alkaloid NCS low borderline
GobtHiC_scaffold_50195000 Alkaloid NCS low borderline
GobtHiC_scaffold_70248210 Alkaloid NCS low borderline
GobtHiC_scaffold_80259080 Alkaloid NCS medium borderline
GobtHiC_scaffold_90292040 Alkaloid NCS low borderline
GobtHiC_scaffold_100024500 Alkaloid NMT low borderline
GobtHiC_scaffold_100028100 Alkaloid NMT low borderline
GobtHiC_scaffold_100038890 Alkaloid NMT medium pass
GobtHiC_scaffold_100039020 Alkaloid NMT medium pass
GobtHiC_scaffold_10004070 Alkaloid NMT medium borderline
GobtHiC_scaffold_100041280 Alkaloid NMT low borderline
GobtHiC_scaffold_10015370 Alkaloid NMT low borderline
GobtHiC_scaffold_110048660 Alkaloid NMT low borderline
GobtHiC_scaffold_110054140 Alkaloid NMT medium pass
GobtHiC_scaffold_110054740 Alkaloid NMT low borderline
GobtHiC_scaffold_120071090 Alkaloid NMT low borderline
GobtHiC_scaffold_120071140 Alkaloid NMT low borderline
GobtHiC_scaffold_120071600 Alkaloid NMT low borderline
GobtHiC_scaffold_120071940 Alkaloid NMT medium pass
GobtHiC_scaffold_130080240 Alkaloid NMT low borderline
GobtHiC_scaffold_140089040 Alkaloid NMT low borderline
GobtHiC_scaffold_140096180 Alkaloid NMT medium pass
GobtHiC_scaffold_20110930 Alkaloid NMT medium borderline
GobtHiC_scaffold_20113360 Alkaloid NMT low borderline
GobtHiC_scaffold_20122930 Alkaloid NMT medium pass
GobtHiC_scaffold_20127000 Alkaloid NMT low borderline
GobtHiC_scaffold_20127010 Alkaloid NMT low borderline
GobtHiC_scaffold_230130620 Alkaloid NMT medium borderline
GobtHiC_scaffold_30138050 Alkaloid NMT medium pass
GobtHiC_scaffold_30140260 Alkaloid NMT medium pass
GobtHiC_scaffold_30143690 Alkaloid NMT low borderline
GobtHiC_scaffold_30159300 Alkaloid NMT low borderline
GobtHiC_scaffold_30161010 Alkaloid NMT low borderline
GobtHiC_scaffold_40172820 Alkaloid NMT low borderline