Grimmia obtusifolia (grimmia_obtusifolia)
Imported from atlas release summary for Grimmia obtusifolia.
903
Candidate Protein Records
634
Pathway-Level Records
1678
Family-Level Calls
Phylogenetic Position
The current species is positioned within the lineage framework used by this site. Its taxon group is highlighted below.
Species Metadata
Taxon group
Bryophytes
Genome status
Genome-level resource available
Site Placement
- This page summarizes pathway coverage, family distributions, and protein/isoform records for the species within the current public dataset.
- If you want to start from the public overview first, open the homepage and then return here for species-level drill-down.
- Family statistics correspond to enzyme families, while pathway statistics correspond to the real category-level pathways.
- Download candidate protein FASTA for this species
Pathway Coverage
6
Pathways
Family Distribution
1678
Family-Level Calls
C4H
7.21%
C3'H/CYP98A
5.84%
BAHD
5.72%
POD
5.36%
4CL
5.01%
CYP76
4.05%
NMT
3.75%
IFS
3.34%
Other Families
59.71%
More Families (94)
T3O
41
2.44%
STR
41
2.44%
DWF4/CYP90B1
41
2.44%
F3H
40
2.38%
IFR
40
2.38%
F3'H/CYP75B
35
2.09%
BR6OX2/CYP85A2
34
2.03%
PAL
30
1.79%
UGT
30
1.79%
GS
29
1.73%
CODM/T6ODM
28
1.67%
7DLGT
28
1.67%
UFGT
28
1.67%
PYKS
27
1.61%
IO
24
1.43%
CYP71
21
1.25%
CAD
19
1.13%
H6H
18
1.07%
SMT1/SMT2/SMT3
18
1.07%
CHS
17
1.01%
T16H
15
0.89%
TRI/TRII
15
0.89%
F3'5'H/CYP75A
15
0.89%
HCT
15
0.89%
LAC
15
0.89%
RAS
15
0.89%
COMT
14
0.83%
G8O/G8H
13
0.77%
SLS
13
0.77%
CAS
12
0.72%
CNMT
11
0.66%
CSE
11
0.66%
SGD
10
0.6%
FNS
10
0.6%
7DLH
9
0.54%
8HGO
9
0.54%
CCR
9
0.54%
COR
8
0.48%
16OMT
8
0.48%
ANR
8
0.48%
CYP90D1
8
0.48%
NCS
7
0.42%
TDC
7
0.42%
SQS/FDFT1
7
0.42%
PMT
6
0.36%
DET2
6
0.36%
CPD/CYP90A1
6
0.36%
MVK
6
0.36%
AACT
6
0.36%
CYP80B1
5
0.3%
ANS/LDOX
5
0.3%
F5H/CYP84A
5
0.3%
CPR
5
0.3%
BR6OX1/CYP85A1
5
0.3%
GGPPS
5
0.3%
LAMT
4
0.24%
CYP719
4
0.24%
BBE
4
0.24%
ADC
4
0.24%
FLS
4
0.24%
TAT
4
0.24%
DWF5
4
0.24%
SQE
4
0.24%
ROT3/CYP90C1
4
0.24%
MPO
3
0.18%
DFR
3
0.18%
CHI
3
0.18%
SMO1/SMO2
3
0.18%
MVD
3
0.18%
6OMT_4OMT_SOMT
2
0.12%
ISY
2
0.12%
TYDC_DDC
2
0.12%
CCoAOMT
2
0.12%
HPPR
2
0.12%
CYP51G1
2
0.12%
HYD1
2
0.12%
FPPS
2
0.12%
HDS/IspG
2
0.12%
MCT/IspD
2
0.12%
DXR
2
0.12%
MDS/IspF
2
0.12%
HDR/IspH
2
0.12%
GES
1
0.06%
DWF7
1
0.06%
DWF1
1
0.06%
CPI1
1
0.06%
FK
1
0.06%
IDI
1
0.06%
CMK/IspE
1
0.06%
TPS
1
0.06%
DXS
1
0.06%
HMGR
1
0.06%
PMK
1
0.06%
HMGS
1
0.06%
Species Pathway Results
The links below show identification results for this species within each pathway, instead of opening the global pathway overview.
| Pathway | Pathway-Level Records | Detected Families | Top family | Results |
|---|---|---|---|---|
| Phenylpropanoid pathway | 170 | 11 | POD (85) | View species results |
| Terpenoid pathway | 153 | 19 | BAHD (60) | View species results |
| Alkaloid pathway | 132 | 16 | NMT (22) | View species results |
| Flavonoid pathway | 80 | 9 | UFGT (23) | View species results |
| Rosmarinic acid pathway | 60 | 7 | C4H (19) | View species results |
| Steroid pathway | 39 | 13 | CAS (9) | View species results |
Broad Catalytic Groups
P450/oxygenase and BAHD/acyltransferase are counted separately as broad catalytic groups and are not mixed into the canonical enzyme-family count.
| Catalytic group | Detected families | Assignment calls | Included families |
|---|---|---|---|
| P450/oxygenase | 23 | 643 | 7DLH, BR6OX1/CYP85A1, BR6OX2/CYP85A2, C3'H/CYP98A, C4H, CPD/CYP90A1, CYP51G1, CYP71, CYP719, CYP76, CYP80B1, CYP90D1, DWF4/CYP90B1, F3'5'H/CYP75A, F3'H/CYP75B, F5H/CYP84A, G8O/G8H, IFS, IO, ROT3/CYP90C1, SLS, T16H, T3O |
| BAHD/acyltransferase | 3 | 126 | BAHD, HCT, RAS |
Identification Result List
Search the public protein/isoform identification results for this species; click pathway or family legends above to narrow within this species.
| Protein/Isoform Record | Pathway | Family | Confidence | Status |
|---|---|---|---|---|
| GobtHiC_scaffold_100034380 | Alkaloid | T3O | medium | pass |
| GobtHiC_scaffold_10007470 | Alkaloid | T3O | medium | borderline |
| GobtHiC_scaffold_10010000 | Alkaloid | T3O | medium | pass |
| GobtHiC_scaffold_10015260 | Alkaloid | T3O | medium | pass |
| GobtHiC_scaffold_10016340 | Alkaloid | T3O | medium | pass |
| GobtHiC_scaffold_110048160 | Alkaloid | T3O | medium | borderline |
| GobtHiC_scaffold_110048170 | Alkaloid | T3O | medium | pass |
| GobtHiC_scaffold_110048180 | Alkaloid | T3O | medium | pass |
| GobtHiC_scaffold_110054960 | Alkaloid | T3O | medium | borderline |
| GobtHiC_scaffold_110055620 | Alkaloid | T3O | medium | pass |
| GobtHiC_scaffold_120063310 | Alkaloid | T3O | medium | borderline |
| GobtHiC_scaffold_120074510 | Alkaloid | T3O | medium | pass |
| GobtHiC_scaffold_120074520 | Alkaloid | T3O | medium | pass |
| GobtHiC_scaffold_120074530 | Alkaloid | T3O | medium | pass |
| GobtHiC_scaffold_120074840 | Alkaloid | T3O | medium | borderline |
| GobtHiC_scaffold_130080920 | Alkaloid | T3O | low | borderline |
| GobtHiC_scaffold_130083960 | Alkaloid | T3O | medium | pass |
| GobtHiC_scaffold_20108670 | Alkaloid | T3O | medium | borderline |
| GobtHiC_scaffold_20110960 | Alkaloid | T3O | low | borderline |
| GobtHiC_scaffold_20117220 | Alkaloid | T3O | low | borderline |
| GobtHiC_scaffold_20122700 | Alkaloid | T3O | medium | pass |
| GobtHiC_scaffold_20126340 | Alkaloid | T3O | medium | borderline |
| GobtHiC_scaffold_40177580 | Alkaloid | T3O | medium | pass |
| GobtHiC_scaffold_40178560 | Alkaloid | T3O | medium | borderline |
| GobtHiC_scaffold_50184120 | Alkaloid | T3O | medium | borderline |
| GobtHiC_scaffold_50185150 | Alkaloid | T3O | low | borderline |
| GobtHiC_scaffold_50187490 | Alkaloid | T3O | medium | borderline |
| GobtHiC_scaffold_60202220 | Alkaloid | T3O | medium | borderline |
| GobtHiC_scaffold_60207680 | Alkaloid | T3O | medium | pass |
| GobtHiC_scaffold_60210390 | Alkaloid | T3O | medium | borderline |
| GobtHiC_scaffold_60210450 | Alkaloid | T3O | medium | borderline |
| GobtHiC_scaffold_70239470 | Alkaloid | T3O | medium | borderline |
| GobtHiC_scaffold_80263170 | Alkaloid | T3O | medium | pass |
| GobtHiC_scaffold_80268960 | Alkaloid | T3O | medium | pass |
| GobtHiC_scaffold_90277920 | Alkaloid | T3O | low | borderline |
| GobtHiC_scaffold_90279420 | Alkaloid | T3O | medium | pass |
| GobtHiC_scaffold_90280750 | Alkaloid | T3O | medium | borderline |
| GobtHiC_scaffold_10003830 | Alkaloid | TDC | low | borderline |
| GobtHiC_scaffold_30142630 | Alkaloid | TDC | low | borderline |
| GobtHiC_scaffold_70233610 | Alkaloid | TDC | low | borderline |
| GobtHiC_scaffold_70236760 | Alkaloid | TDC | low | borderline |
| GobtHiC_scaffold_70238920 | Alkaloid | TDC | medium | borderline |
| GobtHiC_scaffold_70238930 | Alkaloid | TDC | medium | borderline |
| GobtHiC_scaffold_80256640 | Alkaloid | TDC | low | borderline |
| GobtHiC_scaffold_10015030 | Alkaloid | TRI/TRII | low | borderline |
| GobtHiC_scaffold_120061780 | Alkaloid | TRI/TRII | medium | pass |
| GobtHiC_scaffold_120064950 | Alkaloid | TRI/TRII | medium | pass |
| GobtHiC_scaffold_120068600 | Alkaloid | TRI/TRII | medium | pass |
| GobtHiC_scaffold_20106120 | Alkaloid | TRI/TRII | medium | pass |
| GobtHiC_scaffold_20107370 | Alkaloid | TRI/TRII | low | borderline |