PlantSME Plant secondary metabolism enzyme database

Juglans nigra (juglans_nigra)

Imported from atlas release summary for Juglans nigra.

1793
Candidate Genes
105
Families
6
Pathways
Phylogenetic Position
The current species is positioned within the lineage framework used by this site. Its taxon group is highlighted below.
Species Metadata
Taxon group
Eudicots
Genome status
Genome-level resource available
Site Placement
  • This page summarizes pathway coverage, family distributions, and the gene list for the species within the current public dataset.
  • If you want to start from the public overview first, open the homepage and then return here for species-level drill-down.
  • Family statistics correspond to enzyme families, while pathway statistics correspond to the real category-level pathways.
Family Distribution
More Families (97)
Species Pathway Results
The links below show identification results for this species within each pathway, instead of opening the global pathway overview.
Pathway Candidate Genes Families Top family Results
Terpenoid pathway 494 19 BAHD (179) View species results
Phenylpropanoid pathway 393 11 POD (147) View species results
Alkaloid pathway 383 23 7DLGT (71) View species results
Flavonoid pathway 245 10 UFGT (152) View species results
Rosmarinic acid pathway 166 7 C4H (68) View species results
Steroid pathway 112 12 CAS (46) View species results
Broad Catalytic Groups
P450/oxygenase and BAHD/acyltransferase are counted separately as broad catalytic groups and are not mixed into the canonical enzyme-family count.
Catalytic group Families Candidate genes Included families
P450/oxygenase 24 1742 7DLH, BR6OX1/CYP85A1, BR6OX2/CYP85A2, C3'H/CYP98A, C4H, CPD/CYP90A1, CYP51G1, CYP71, CYP719, CYP76, CYP80B1, CYP80F1, CYP90D1, DWF4/CYP90B1, F3'5'H/CYP75A, F3'H/CYP75B, F5H/CYP84A, G8O/G8H, IFS, IO, ROT3/CYP90C1, SLS, T16H, T3O
BAHD/acyltransferase 3 315 BAHD, HCT, RAS
Identification Result List
Search the public identification results for this species; click pathway or family legends above to narrow within this species.
Current pathway filter: Steroid pathway
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Gene Pathway Family Confidence Status
Jnigscaffold80760256710.1 Steroid BR6OX2/CYP85A2 low borderline
Jnigscaffold81110257550.1 Steroid BR6OX2/CYP85A2 medium borderline
Jnigscaffold83900262590.1 Steroid BR6OX2/CYP85A2 low borderline
Jnigscaffold84000262730.1 Steroid BR6OX2/CYP85A2 low borderline
Jnigscaffold86410266790.1 Steroid BR6OX2/CYP85A2 low borderline
Jnigscaffold86870267490.1 Steroid BR6OX2/CYP85A2 low borderline
Jnigscaffold87070268380.1 Steroid BR6OX2/CYP85A2 low borderline
Jnigscaffold88020269900.1 Steroid BR6OX2/CYP85A2 low borderline
Jnigscaffold8980274310.1 Steroid BR6OX2/CYP85A2 low borderline
Jnigscaffold91100276910.1 Steroid BR6OX2/CYP85A2 low borderline
Jnigscaffold91450278020.1 Steroid BR6OX2/CYP85A2 low borderline
Jnigscaffold91670279020.1 Steroid BR6OX2/CYP85A2 low borderline
JnigC5375050003770.1 Steroid CAS medium pass
JnigC5381690004160.1 Steroid CAS medium pass
JnigC5413750007840.1 Steroid CAS medium pass
JnigC5432610011200.1 Steroid CAS medium pass
Jnigscaffold10070021710.1 Steroid CAS medium pass
Jnigscaffold1060024040.1 Steroid CAS low borderline
Jnigscaffold14330040580.1 Steroid CAS medium pass
Jnigscaffold1800055050.1 Steroid CAS medium pass
Jnigscaffold18030055200.1 Steroid CAS medium pass
Jnigscaffold19040057780.1 Steroid CAS medium pass
Jnigscaffold19200058380.1 Steroid CAS medium pass
Jnigscaffold19930061790.1 Steroid CAS medium pass
Jnigscaffold20970065700.1 Steroid CAS medium pass
Jnigscaffold22460070710.1 Steroid CAS low borderline
Jnigscaffold25020084840.1 Steroid CAS medium pass
Jnigscaffold25880088280.1 Steroid CAS medium pass
Jnigscaffold27080095360.1 Steroid CAS medium pass
Jnigscaffold27160095490.1 Steroid CAS medium pass
Jnigscaffold27820101740.1 Steroid CAS low borderline
Jnigscaffold29230107650.1 Steroid CAS low borderline
Jnigscaffold30380114010.1 Steroid CAS medium pass
Jnigscaffold31290119270.1 Steroid CAS low borderline
Jnigscaffold31720121410.1 Steroid CAS medium pass
Jnigscaffold32660124580.1 Steroid CAS medium pass
Jnigscaffold32660124650.1 Steroid CAS medium pass
Jnigscaffold32660124680.1 Steroid CAS medium pass
Jnigscaffold33620127280.1 Steroid CAS medium pass
Jnigscaffold33620127440.1 Steroid CAS medium pass
Jnigscaffold33640127790.1 Steroid CAS low borderline
Jnigscaffold34370130910.1 Steroid CAS medium pass
Jnigscaffold35990135920.1 Steroid CAS medium pass
Jnigscaffold36600138790.1 Steroid CAS medium pass
Jnigscaffold3700140890.1 Steroid CAS medium pass
Jnigscaffold3700140950.1 Steroid CAS medium pass
Jnigscaffold39950149650.1 Steroid CAS medium pass
Jnigscaffold40950152020.1 Steroid CAS medium pass
Jnigscaffold41880156220.1 Steroid CAS low borderline
Jnigscaffold43160160550.1 Steroid CAS medium pass