PlantSME Plant secondary metabolism enzyme database

Juglans nigra (juglans_nigra)

Imported from atlas release summary for Juglans nigra.

1793
Candidate Genes
105
Families
6
Pathways
Phylogenetic Position
The current species is positioned within the lineage framework used by this site. Its taxon group is highlighted below.
Species Metadata
Taxon group
Eudicots
Genome status
Genome-level resource available
Site Placement
  • This page summarizes pathway coverage, family distributions, and the gene list for the species within the current public dataset.
  • If you want to start from the public overview first, open the homepage and then return here for species-level drill-down.
  • Family statistics correspond to enzyme families, while pathway statistics correspond to the real category-level pathways.
Family Distribution
More Families (97)
Species Pathway Results
The links below show identification results for this species within each pathway, instead of opening the global pathway overview.
Pathway Candidate Genes Families Top family Results
Terpenoid pathway 494 19 BAHD (179) View species results
Phenylpropanoid pathway 393 11 POD (147) View species results
Alkaloid pathway 383 23 7DLGT (71) View species results
Flavonoid pathway 245 10 UFGT (152) View species results
Rosmarinic acid pathway 166 7 C4H (68) View species results
Steroid pathway 112 12 CAS (46) View species results
Broad Catalytic Groups
P450/oxygenase and BAHD/acyltransferase are counted separately as broad catalytic groups and are not mixed into the canonical enzyme-family count.
Catalytic group Families Candidate genes Included families
P450/oxygenase 24 1742 7DLH, BR6OX1/CYP85A1, BR6OX2/CYP85A2, C3'H/CYP98A, C4H, CPD/CYP90A1, CYP51G1, CYP71, CYP719, CYP76, CYP80B1, CYP80F1, CYP90D1, DWF4/CYP90B1, F3'5'H/CYP75A, F3'H/CYP75B, F5H/CYP84A, G8O/G8H, IFS, IO, ROT3/CYP90C1, SLS, T16H, T3O
BAHD/acyltransferase 3 315 BAHD, HCT, RAS
Identification Result List
Search the public identification results for this species; click pathway or family legends above to narrow within this species.
Current pathway filter: Alkaloid pathway
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Gene Pathway Family Confidence Status
Jnigscaffold91360277430.2 Alkaloid 7DLGT medium pass
Jnigscaffold91430277940.1 Alkaloid 7DLGT low borderline
Jnigscaffold91440278000.1 Alkaloid 7DLGT medium pass
Jnigscaffold91710279560.1 Alkaloid 7DLGT medium pass
Jnigscaffold9210280340.1 Alkaloid 7DLGT low borderline
Jnigscaffold9400280750.1 Alkaloid 7DLGT medium pass
Jnigscaffold9670281700.1 Alkaloid 7DLGT high pass
JnigC5407130007160.1 Alkaloid 7DLH medium borderline
JnigC5418570008530.1 Alkaloid 7DLH medium borderline
JnigC5418570008550.1 Alkaloid 7DLH medium borderline
JnigC5444090016860.1 Alkaloid 7DLH medium borderline
Jnigscaffold10300022320.1 Alkaloid 7DLH medium borderline
Jnigscaffold10760025380.1 Alkaloid 7DLH low borderline
Jnigscaffold13940038380.1 Alkaloid 7DLH low borderline
Jnigscaffold19750060670.1 Alkaloid 7DLH medium borderline
Jnigscaffold2330075180.1 Alkaloid 7DLH medium borderline
Jnigscaffold24490081760.1 Alkaloid 7DLH medium borderline
Jnigscaffold25880088640.1 Alkaloid 7DLH medium borderline
Jnigscaffold26260091190.1 Alkaloid 7DLH medium borderline
Jnigscaffold280103420.1 Alkaloid 7DLH medium borderline
Jnigscaffold2880106140.1 Alkaloid 7DLH medium borderline
Jnigscaffold30960117040.1 Alkaloid 7DLH medium borderline
Jnigscaffold36400137550.1 Alkaloid 7DLH medium borderline
Jnigscaffold37900143310.1 Alkaloid 7DLH medium borderline
Jnigscaffold43900162340.1 Alkaloid 7DLH medium borderline
Jnigscaffold46780171030.1 Alkaloid 7DLH low borderline
Jnigscaffold49880181130.1 Alkaloid 7DLH medium borderline
Jnigscaffold5400192270.1 Alkaloid 7DLH medium borderline
Jnigscaffold5660199520.1 Alkaloid 7DLH medium borderline
Jnigscaffold77180249740.1 Alkaloid 7DLH medium borderline
Jnigscaffold78110251850.1 Alkaloid 7DLH medium borderline
Jnigscaffold9670281720.1 Alkaloid 7DLH low borderline
Jnigscaffold12150030630.1 Alkaloid 8HGO medium borderline
Jnigscaffold19750060660.1 Alkaloid 8HGO medium borderline
Jnigscaffold2170068220.2 Alkaloid 8HGO medium borderline
Jnigscaffold27160095380.1 Alkaloid 8HGO medium borderline
Jnigscaffold27160095430.1 Alkaloid 8HGO medium borderline
Jnigscaffold36570138220.1 Alkaloid 8HGO medium borderline
Jnigscaffold4590168570.1 Alkaloid 8HGO medium borderline
Jnigscaffold47820175120.1 Alkaloid 8HGO medium borderline
Jnigscaffold5300188570.1 Alkaloid 8HGO medium borderline
Jnigscaffold57910202980.1 Alkaloid 8HGO medium borderline
Jnigscaffold57910203030.1 Alkaloid 8HGO medium borderline
Jnigscaffold65010218250.1 Alkaloid 8HGO medium borderline
Jnigscaffold35470134480.1 Alkaloid ADC medium pass
Jnigscaffold80030255100.1 Alkaloid ADC medium pass
JnigC5380150004110.1 Alkaloid BBE medium borderline
Jnigscaffold17330052500.1 Alkaloid BBE medium borderline
Jnigscaffold20810064970.1 Alkaloid BBE medium borderline
Jnigscaffold21090066010.1 Alkaloid BBE medium borderline