PlantSME Plant secondary metabolism enzyme database

Juglans nigra (juglans_nigra)

Imported from atlas release summary for Juglans nigra.

1793
Candidate Genes
105
Families
6
Pathways
Phylogenetic Position
The current species is positioned within the lineage framework used by this site. Its taxon group is highlighted below.
Species Metadata
Taxon group
Eudicots
Genome status
Genome-level resource available
Site Placement
  • This page summarizes pathway coverage, family distributions, and the gene list for the species within the current public dataset.
  • If you want to start from the public overview first, open the homepage and then return here for species-level drill-down.
  • Family statistics correspond to enzyme families, while pathway statistics correspond to the real category-level pathways.
Family Distribution
More Families (97)
Species Pathway Results
The links below show identification results for this species within each pathway, instead of opening the global pathway overview.
Pathway Candidate Genes Families Top family Results
Terpenoid pathway 494 19 BAHD (179) View species results
Phenylpropanoid pathway 393 11 POD (147) View species results
Alkaloid pathway 383 23 7DLGT (71) View species results
Flavonoid pathway 245 10 UFGT (152) View species results
Rosmarinic acid pathway 166 7 C4H (68) View species results
Steroid pathway 112 12 CAS (46) View species results
Broad Catalytic Groups
P450/oxygenase and BAHD/acyltransferase are counted separately as broad catalytic groups and are not mixed into the canonical enzyme-family count.
Catalytic group Families Candidate genes Included families
P450/oxygenase 24 1742 7DLH, BR6OX1/CYP85A1, BR6OX2/CYP85A2, C3'H/CYP98A, C4H, CPD/CYP90A1, CYP51G1, CYP71, CYP719, CYP76, CYP80B1, CYP80F1, CYP90D1, DWF4/CYP90B1, F3'5'H/CYP75A, F3'H/CYP75B, F5H/CYP84A, G8O/G8H, IFS, IO, ROT3/CYP90C1, SLS, T16H, T3O
BAHD/acyltransferase 3 315 BAHD, HCT, RAS
Identification Result List
Search the public identification results for this species; click pathway or family legends above to narrow within this species.
Current pathway filter: Steroid pathway
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Gene Pathway Family Confidence Status
Jnigscaffold78740252580.1 Steroid DWF4/CYP90B1 low borderline
Jnigscaffold7930253390.1 Steroid DWF4/CYP90B1 medium borderline
Jnigscaffold80940257340.1 Steroid DWF4/CYP90B1 low borderline
Jnigscaffold81110257730.1 Steroid DWF4/CYP90B1 low borderline
Jnigscaffold84170263040.1 Steroid DWF4/CYP90B1 low borderline
Jnigscaffold86800267190.1 Steroid DWF4/CYP90B1 low borderline
Jnigscaffold8820270070.1 Steroid DWF4/CYP90B1 low borderline
Jnigscaffold12150030550.1 Steroid DWF5 medium borderline
Jnigscaffold18240055790.1 Steroid DWF7 low borderline
Jnigscaffold19020057770.1 Steroid DWF7 medium pass
Jnigscaffold29050106830.1 Steroid DWF7 low borderline
Jnigscaffold31100117940.1 Steroid DWF7 low borderline
Jnigscaffold22800072230.1 Steroid FK medium pass
Jnigscaffold23780077920.1 Steroid FK medium pass
Jnigscaffold15780045460.1 Steroid HYD1 high pass
Jnigscaffold25880088370.1 Steroid HYD1 low borderline
Jnigscaffold12820033890.1 Steroid ROT3/CYP90C1 medium pass
Jnigscaffold28260105170.1 Steroid ROT3/CYP90C1 medium borderline
Jnigscaffold2880106140.1 Steroid ROT3/CYP90C1 medium borderline
Jnigscaffold33620127410.1 Steroid ROT3/CYP90C1 medium borderline
Jnigscaffold3880146240.1 Steroid ROT3/CYP90C1 medium borderline
Jnigscaffold4750173690.1 Steroid ROT3/CYP90C1 medium borderline
Jnigscaffold56600199590.1 Steroid ROT3/CYP90C1 medium borderline
Jnigscaffold63000213730.1 Steroid ROT3/CYP90C1 low borderline
Jnigscaffold7070233250.1 Steroid ROT3/CYP90C1 medium borderline
Jnigscaffold70800233450.2 Steroid ROT3/CYP90C1 medium borderline
Jnigscaffold77400250280.1 Steroid ROT3/CYP90C1 medium borderline
Jnigscaffold11850029600.1 Steroid SMO1/SMO2 medium pass
Jnigscaffold41290153600.1 Steroid SMO1/SMO2 medium pass
Jnigscaffold50860183310.1 Steroid SMO1/SMO2 medium pass
Jnigscaffold73900242040.1 Steroid SMO1/SMO2 medium pass
JnigC5297850001290.1 Steroid SMT1/SMT2/SMT3 medium pass
JnigC5428290010510.1 Steroid SMT1/SMT2/SMT3 medium pass
JnigC5433690011620.1 Steroid SMT1/SMT2/SMT3 medium pass
JnigC5434850012050.1 Steroid SMT1/SMT2/SMT3 low borderline
JnigC5441430014640.1 Steroid SMT1/SMT2/SMT3 low borderline
JnigC5441830015140.1 Steroid SMT1/SMT2/SMT3 medium pass
JnigC5446030019790.1 Steroid SMT1/SMT2/SMT3 medium pass
JnigC5446030019800.1 Steroid SMT1/SMT2/SMT3 medium pass
JnigC5446030019820.1 Steroid SMT1/SMT2/SMT3 medium pass
Jnigscaffold10080021770.1 Steroid SMT1/SMT2/SMT3 medium pass
Jnigscaffold12590033160.1 Steroid SMT1/SMT2/SMT3 medium pass
Jnigscaffold14700042050.1 Steroid SMT1/SMT2/SMT3 medium pass
Jnigscaffold14700042060.1 Steroid SMT1/SMT2/SMT3 medium pass
Jnigscaffold15390043520.1 Steroid SMT1/SMT2/SMT3 medium pass
Jnigscaffold16260048520.1 Steroid SMT1/SMT2/SMT3 medium pass
Jnigscaffold19240059010.1 Steroid SMT1/SMT2/SMT3 medium pass
Jnigscaffold19750060750.1 Steroid SMT1/SMT2/SMT3 medium pass
Jnigscaffold19960062180.1 Steroid SMT1/SMT2/SMT3 low borderline
Jnigscaffold20430063080.2 Steroid SMT1/SMT2/SMT3 medium pass