PlantSME Plant secondary metabolism enzyme database

Leucobryum bowringii (leucobryum_bowringii)

Imported from atlas release summary for Leucobryum bowringii.

694
Candidate Genes
103
Families
6
Pathways
Phylogenetic Position
The current species is positioned within the lineage framework used by this site. Its taxon group is highlighted below.
Algae
Site group 29
Bryophytes
Current group 125
Lycophytes/Ferns
Site group 4
Gymnosperms
Site group 6
Basal angiosperms
Site group 13
Monocots
Site group 117
Eudicots
Site group 495
Species Metadata
Taxon group
Bryophytes
Genome status
Genome-level resource available
Site Placement
  • This page summarizes pathway coverage, family distributions, and the gene list for the species within the current public dataset.
  • If you want to start from the public overview first, open the homepage and then return here for species-level drill-down.
  • Family statistics correspond to enzyme families, while pathway statistics correspond to the real category-level pathways.
Pathway Coverage
Phenylpropanoid pathway 26.51% Terpenoid pathway 22.33% Alkaloid pathway 20.32% Flavonoid pathway 12.68% Rosmarinic acid pathway 11.53% Steroid pathway 6.63%
Family Distribution
C4H 7.52% C3'H/CYP98A 6.86% CYP76 5.81% BAHD 4.71% 4CL 4.56% POD 4.21% IFS 4.11% NMT 3.46%
Other Families 58.77%
More Families (95)
BR6OX2/CYP85A2 59 2.96% DWF4/CYP90B1 52 2.61% T3O 51 2.56% STR 45 2.25% PAL 45 2.25% IO 44 2.2% F3H 43 2.15% IFR 40 2.0% F3'H/CYP75B 39 1.95% CODM/T6ODM 34 1.7% PYKS 31 1.55% GS 30 1.5% UGT 30 1.5% UFGT 29 1.45% 7DLGT 27 1.35% SMT1/SMT2/SMT3 24 1.2% LAC 23 1.15% COMT 22 1.1% G8O/G8H 21 1.05% T16H 21 1.05% CHS 20 1.0% F3'5'H/CYP75A 20 1.0% CAD 19 0.95% CAS 18 0.9% TRI/TRII 17 0.85% CSE 16 0.8% CYP71 15 0.75% SGD 14 0.7% SLS 13 0.65% 16OMT 13 0.65% FNS 13 0.65% CNMT 12 0.6% LAMT 12 0.6% H6H 12 0.6% HCT 11 0.55% RAS 11 0.55% CPD/CYP90A1 9 0.45% 8HGO 8 0.4% COR 8 0.4% NCS 8 0.4% CYP51G1 8 0.4% SQS/FDFT1 8 0.4% AACT 8 0.4% 7DLH 7 0.35% CYP80B1 7 0.35% ANR 7 0.35% DET2 7 0.35% F5H/CYP84A 6 0.3% BR6OX1/CYP85A1 6 0.3% CYP90D1 6 0.3% BBE 5 0.25% PMT 5 0.25% TDC 5 0.25% CCR 5 0.25% TAT 5 0.25% ROT3/CYP90C1 5 0.25% DWF5 5 0.25% FPPS 5 0.25% MVK 5 0.25% CYP719 4 0.2% MPO 4 0.2% DFR 4 0.2% CHI 4 0.2% ANS/LDOX 4 0.2% CPR 4 0.2% TPS 4 0.2% GGPPS 4 0.2% GES 3 0.15% ISY 3 0.15% 6OMT_4OMT_SOMT 3 0.15% ADC 3 0.15% HPPR 3 0.15% SQE 3 0.15% CCoAOMT 2 0.1% SMO1/SMO2 2 0.1% MCT/IspD 2 0.1% MVD 2 0.1% HMGS 2 0.1% HDS/IspG 2 0.1% DXS 2 0.1% TYDC_DDC 1 0.05% FLS 1 0.05% HYD1 1 0.05% DWF1 1 0.05% FK 1 0.05% CPI1 1 0.05% DWF7 1 0.05% MDS/IspF 1 0.05% PMK 1 0.05% DXR 1 0.05% CMK/IspE 1 0.05% GPPS 1 0.05% IDI 1 0.05% HDR/IspH 1 0.05% HMGR 1 0.05%
Species Pathway Results
The links below show identification results for this species within each pathway, instead of opening the global pathway overview.
Pathway Candidate Genes Families Top family Results
Phenylpropanoid pathway 184 10 POD (78) View species results
Terpenoid pathway 155 19 BAHD (59) View species results
Alkaloid pathway 141 17 NMT (27) View species results
Flavonoid pathway 88 10 UFGT (25) View species results
Rosmarinic acid pathway 80 7 C4H (38) View species results
Steroid pathway 46 12 CAS (16) View species results
Broad Catalytic Groups
P450/oxygenase and BAHD/acyltransferase are counted separately as broad catalytic groups and are not mixed into the canonical enzyme-family count.
Catalytic group Families Candidate genes Included families
P450/oxygenase 23 878 7DLH, BR6OX1/CYP85A1, BR6OX2/CYP85A2, C3'H/CYP98A, C4H, CPD/CYP90A1, CYP51G1, CYP71, CYP719, CYP76, CYP80B1, CYP90D1, DWF4/CYP90B1, F3'5'H/CYP75A, F3'H/CYP75B, F5H/CYP84A, G8O/G8H, IFS, IO, ROT3/CYP90C1, SLS, T16H, T3O
BAHD/acyltransferase 3 116 BAHD, HCT, RAS
Identification Result List
Search the public identification results for this species; click pathway or family legends above to narrow within this species.
Current family filter: GS
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Gene Pathway Family Confidence Status
Lbowcontig_10006080 Alkaloid GS low borderline
Lbowcontig_10006150 Alkaloid GS low borderline
Lbowcontig_120056030 Alkaloid GS medium pass
Lbowcontig_120072810 Alkaloid GS high pass
Lbowcontig_150106580 Alkaloid GS low borderline
Lbowcontig_160118330 Alkaloid GS low borderline
Lbowcontig_160123690 Alkaloid GS low borderline
Lbowcontig_160142050 Alkaloid GS low borderline
Lbowcontig_170149240 Alkaloid GS medium pass
Lbowcontig_190155470 Alkaloid GS low borderline
Lbowcontig_200187590 Alkaloid GS low borderline
Lbowcontig_200202490 Alkaloid GS low borderline
Lbowcontig_200202510 Alkaloid GS low borderline
Lbowcontig_200205330 Alkaloid GS low borderline
Lbowcontig_220215700 Alkaloid GS low borderline
Lbowcontig_40238380 Alkaloid GS low borderline
Lbowcontig_40239900 Alkaloid GS low borderline
Lbowcontig_40241030 Alkaloid GS low borderline
Lbowcontig_40242370 Alkaloid GS high pass
Lbowcontig_40256280 Alkaloid GS medium pass
Lbowcontig_60307280 Alkaloid GS low borderline
Lbowcontig_60311310 Alkaloid GS low borderline
Lbowcontig_60317800 Alkaloid GS low borderline
Lbowcontig_60323760 Alkaloid GS low borderline
Lbowcontig_80340000 Alkaloid GS low borderline
Lbowcontig_90354440 Alkaloid GS medium pass
Lbowcontig_90356640 Alkaloid GS high pass
Lbowcontig_90357380 Alkaloid GS low borderline
Lbowcontig_90360620 Alkaloid GS medium pass
Lbowcontig_90369170 Alkaloid GS high pass